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CENTDIST: discovery of co-associated factors by motif distribution.
Zhang Z, Chang CW, Goh WL, Sung WK, Cheung E. Zhang Z, et al. Among authors: sung wk. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W391-9. doi: 10.1093/nar/gkr387. Epub 2011 May 20. Nucleic Acids Res. 2011. PMID: 21602269 Free PMC article.
An oestrogen-receptor-alpha-bound human chromatin interactome.
Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, Orlov YL, Velkov S, Ho A, Mei PH, Chew EG, Huang PY, Welboren WJ, Han Y, Ooi HS, Ariyaratne PN, Vega VB, Luo Y, Tan PY, Choy PY, Wansa KD, Zhao B, Lim KS, Leow SC, Yow JS, Joseph R, Li H, Desai KV, Thomsen JS, Lee YK, Karuturi RK, Herve T, Bourque G, Stunnenberg HG, Ruan X, Cacheux-Rataboul V, Sung WK, Liu ET, Wei CL, Cheung E, Ruan Y. Fullwood MJ, et al. Among authors: sung wk. Nature. 2009 Nov 5;462(7269):58-64. doi: 10.1038/nature08497. Nature. 2009. PMID: 19890323 Free PMC article.
Localized motif discovery in gene regulatory sequences.
Narang V, Mittal A, Sung WK. Narang V, et al. Among authors: sung wk. Bioinformatics. 2010 May 1;26(9):1152-9. doi: 10.1093/bioinformatics/btq106. Epub 2010 Mar 11. Bioinformatics. 2010. PMID: 20223835
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei CL, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun Y, Fullwood MJ, Cheung E, Liu E, Sung WK, Snyder M, Ruan Y. Li G, et al. Among authors: sung wk. Cell. 2012 Jan 20;148(1-2):84-98. doi: 10.1016/j.cell.2011.12.014. Cell. 2012. PMID: 22265404 Free PMC article.
Telomerase directly regulates NF-κB-dependent transcription.
Ghosh A, Saginc G, Leow SC, Khattar E, Shin EM, Yan TD, Wong M, Zhang Z, Li G, Sung WK, Zhou J, Chng WJ, Li S, Liu E, Tergaonkar V. Ghosh A, et al. Among authors: sung wk. Nat Cell Biol. 2012 Dec;14(12):1270-81. doi: 10.1038/ncb2621. Epub 2012 Nov 18. Nat Cell Biol. 2012. PMID: 23159929
Evaluation of methods for modeling transcription factor sequence specificity.
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium; Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR. Weirauch MT, et al. Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354101 Free PMC article.
188 results