Friedman N - Search Results

1

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.

Rabani M, Levin JZ, Fan L, Adiconis X, Raychowdhury R, Garber M, Gnirke A, Nusbaum C, Hacohen N, Friedman N, Amit I, Regev A. Rabani M, et al. Among authors: friedman n. Nat Biotechnol. 2011 May;29(5):436-42. doi: 10.1038/nbt.1861. Epub 2011 Apr 24. Nat Biotechnol. 2011. PMID: 21516085 Free PMC article.

2

Comprehensive comparative analysis of strand-specific RNA sequencing methods.

Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. Levin JZ, et al. Among authors: friedman n. Nat Methods. 2010 Sep;7(9):709-15. doi: 10.1038/nmeth.1491. Epub 2010 Aug 15. Nat Methods. 2010. PMID: 20711195 Free PMC article.

3

Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Grabherr MG, et al. Among authors: friedman n. Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883. Nat Biotechnol. 2011. PMID: 21572440 Free PMC article.

4

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.

Shalek AK, Satija R, Shuga J, Trombetta JJ, Gennert D, Lu D, Chen P, Gertner RS, Gaublomme JT, Yosef N, Schwartz S, Fowler B, Weaver S, Wang J, Wang X, Ding R, Raychowdhury R, Friedman N, Hacohen N, Park H, May AP, Regev A. Shalek AK, et al. Among authors: friedman n. Nature. 2014 Jun 19;510(7505):363-9. doi: 10.1038/nature13437. Epub 2014 Jun 11. Nature. 2014. PMID: 24919153 Free PMC article.

5

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.

Rabani M, Raychowdhury R, Jovanovic M, Rooney M, Stumpo DJ, Pauli A, Hacohen N, Schier AF, Blackshear PJ, Friedman N, Amit I, Regev A. Rabani M, et al. Among authors: friedman n. Cell. 2014 Dec 18;159(7):1698-710. doi: 10.1016/j.cell.2014.11.015. Epub 2014 Dec 11. Cell. 2014. PMID: 25497548 Free PMC article.

6

Natural history and evolutionary principles of gene duplication in fungi.

Wapinski I, Pfeffer A, Friedman N, Regev A. Wapinski I, et al. Among authors: friedman n. Nature. 2007 Sep 6;449(7158):54-61. doi: 10.1038/nature06107. Nature. 2007. PMID: 17805289

7

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species.

Yassour M, Pfiffner J, Levin JZ, Adiconis X, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Yassour M, et al. Among authors: friedman n. Genome Biol. 2010;11(8):R87. doi: 10.1186/gb-2010-11-8-r87. Epub 2010 Aug 26. Genome Biol. 2010. PMID: 20796282 Free PMC article.

8

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.

Garber M, Yosef N, Goren A, Raychowdhury R, Thielke A, Guttman M, Robinson J, Minie B, Chevrier N, Itzhaki Z, Blecher-Gonen R, Bornstein C, Amann-Zalcenstein D, Weiner A, Friedrich D, Meldrim J, Ram O, Cheng C, Gnirke A, Fisher S, Friedman N, Wong B, Bernstein BE, Nusbaum C, Hacohen N, Regev A, Amit I. Garber M, et al. Among authors: friedman n. Mol Cell. 2012 Sep 14;47(5):810-22. doi: 10.1016/j.molcel.2012.07.030. Epub 2012 Aug 30. Mol Cell. 2012. PMID: 22940246 Free PMC article.

9

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.

Dixit A, Parnas O, Li B, Chen J, Fulco CP, Jerby-Arnon L, Marjanovic ND, Dionne D, Burks T, Raychowdhury R, Adamson B, Norman TM, Lander ES, Weissman JS, Friedman N, Regev A. Dixit A, et al. Among authors: friedman n. Cell. 2016 Dec 15;167(7):1853-1866.e17. doi: 10.1016/j.cell.2016.11.038. Cell. 2016. PMID: 27984732 Free PMC article.

10

Structure and function of a transcriptional network activated by the MAPK Hog1.

Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. Capaldi AP, et al. Among authors: friedman n. Nat Genet. 2008 Nov;40(11):1300-6. doi: 10.1038/ng.235. Epub 2008 Oct 19. Nat Genet. 2008. PMID: 18931682 Free PMC article.

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