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The genomic standards consortium: bringing standards to life for microbial ecology.
Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I, Cochrane G, Nakamura Y, Sansone SA, Glöckner FO, Field D. Yilmaz P, et al. Among authors: nakamura y. ISME J. 2011 Oct;5(10):1565-7. doi: 10.1038/ismej.2011.39. Epub 2011 Apr 7. ISME J. 2011. PMID: 21472015 Free PMC article. No abstract available.
The International Nucleotide Sequence Database Collaboration.
Cochrane G, Karsch-Mizrachi I, Nakamura Y; International Nucleotide Sequence Database Collaboration. Cochrane G, et al. Among authors: nakamura y. Nucleic Acids Res. 2011 Jan;39(Database issue):D15-8. doi: 10.1093/nar/gkq1150. Epub 2010 Nov 23. Nucleic Acids Res. 2011. PMID: 21106499 Free PMC article.
The International Nucleotide Sequence Database Collaboration.
Nakamura Y, Cochrane G, Karsch-Mizrachi I; International Nucleotide Sequence Database Collaboration. Nakamura Y, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D21-4. doi: 10.1093/nar/gks1084. Epub 2012 Nov 24. Nucleic Acids Res. 2013. PMID: 23180798 Free PMC article.
Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.
Federhen S, Clark K, Barrett T, Parkinson H, Ostell J, Kodama Y, Mashima J, Nakamura Y, Cochrane G, Karsch-Mizrachi I. Federhen S, et al. Among authors: nakamura y. Stand Genomic Sci. 2014 Jan 29;9(3):1275-7. doi: 10.4056/sigs.4851102. eCollection 2014 Jun 15. Stand Genomic Sci. 2014. PMID: 25197497 Free PMC article.
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.
Hirschman L, Sterk P, Field D, Wooley J, Cochrane G, Gilbert J, Kolker E, Kyrpides N, Meyer F, Mizrachi I, Nakamura Y, Sansone SA, Schriml L, Tatusova T, White O, Yilmaz P. Hirschman L, et al. Among authors: nakamura y. Stand Genomic Sci. 2010 Jun 15;2(3):357-60. doi: 10.4056/sigs.802738. Stand Genomic Sci. 2010. PMID: 21304719 Free PMC article.
The International Nucleotide Sequence Database Collaboration.
Karsch-Mizrachi I, Nakamura Y, Cochrane G; International Nucleotide Sequence Database Collaboration. Karsch-Mizrachi I, et al. Among authors: nakamura y. Nucleic Acids Res. 2012 Jan;40(Database issue):D33-7. doi: 10.1093/nar/gkr1006. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080546 Free PMC article.
Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits.
Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H. Minamikawa MF, et al. Among authors: nakamura y. Sci Rep. 2017 Jul 5;7(1):4721. doi: 10.1038/s41598-017-05100-x. Sci Rep. 2017. PMID: 28680114 Free PMC article.
OryzaGenome: Genome Diversity Database of Wild Oryza Species.
Ohyanagi H, Ebata T, Huang X, Gong H, Fujita M, Mochizuki T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y, Feng Q, Wang ZX, Han B, Kurata N. Ohyanagi H, et al. Among authors: nakamura y. Plant Cell Physiol. 2016 Jan;57(1):e1. doi: 10.1093/pcp/pcv171. Epub 2015 Nov 16. Plant Cell Physiol. 2016. PMID: 26578696 Free PMC article.
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