Kilpinen S - Search Results

1

Fibroblast growth factor receptor 4 regulates tumor invasion by coupling fibroblast growth factor signaling to extracellular matrix degradation.

Sugiyama N, Varjosalo M, Meller P, Lohi J, Hyytiäinen M, Kilpinen S, Kallioniemi O, Ingvarsen S, Engelholm LH, Taipale J, Alitalo K, Keski-Oja J, Lehti K. Sugiyama N, et al. Among authors: kilpinen s. Cancer Res. 2010 Oct 15;70(20):7851-61. doi: 10.1158/0008-5472.CAN-10-1223. Epub 2010 Sep 28. Cancer Res. 2010. PMID: 20876804

2

NMD microarray analysis for rapid genome-wide screen of mutated genes in cancer.

Wolf M, Edgren H, Muggerud A, Kilpinen S, Huusko P, Sørlie T, Mousses S, Kallioniemi O. Wolf M, et al. Among authors: kilpinen s. Cell Oncol. 2005;27(3):169-73. doi: 10.1155/2005/478316. Cell Oncol. 2005. PMID: 16037637 Free PMC article. Review.

3

TMPRSS2 fusions with oncogenic ETS factors in prostate cancer involve unbalanced genomic rearrangements and are associated with HDAC1 and epigenetic reprogramming.

Iljin K, Wolf M, Edgren H, Gupta S, Kilpinen S, Skotheim RI, Peltola M, Smit F, Verhaegh G, Schalken J, Nees M, Kallioniemi O. Iljin K, et al. Among authors: kilpinen s. Cancer Res. 2006 Nov 1;66(21):10242-6. doi: 10.1158/0008-5472.CAN-06-1986. Cancer Res. 2006. PMID: 17079440 Free article.

4

Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling.

Varjosalo M, Björklund M, Cheng F, Syvänen H, Kivioja T, Kilpinen S, Sun Z, Kallioniemi O, Stunnenberg HG, He WW, Ojala P, Taipale J. Varjosalo M, et al. Among authors: kilpinen s. Cell. 2008 May 2;133(3):537-48. doi: 10.1016/j.cell.2008.02.047. Cell. 2008. PMID: 18455992 Free article.

5

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues.

Kilpinen S, Autio R, Ojala K, Iljin K, Bucher E, Sara H, Pisto T, Saarela M, Skotheim RI, Björkman M, Mpindi JP, Haapa-Paananen S, Vainio P, Edgren H, Wolf M, Astola J, Nees M, Hautaniemi S, Kallioniemi O. Kilpinen S, et al. Genome Biol. 2008;9(9):R139. doi: 10.1186/gb-2008-9-9-r139. Epub 2008 Sep 19. Genome Biol. 2008. PMID: 18803840 Free PMC article.

6

Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations.

Autio R, Kilpinen S, Saarela M, Kallioniemi O, Hautaniemi S, Astola J. Autio R, et al. Among authors: kilpinen s. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S24. doi: 10.1186/1471-2105-10-S1-S24. BMC Bioinformatics. 2009. PMID: 19208124 Free PMC article.

7

Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2.

Rantala JK, Edgren H, Lehtinen L, Wolf M, Kleivi K, Vollan HK, Aaltola AR, Laasola P, Kilpinen S, Saviranta P, Iljin K, Kallioniemi O. Rantala JK, et al. Among authors: kilpinen s. Neoplasia. 2010 Nov;12(11):877-88. doi: 10.1593/neo.10548. Neoplasia. 2010. PMID: 21082043 Free PMC article.

8

Analysis of kinase gene expression patterns across 5681 human tissue samples reveals functional genomic taxonomy of the kinome.

Kilpinen S, Ojala K, Kallioniemi O. Kilpinen S, et al. PLoS One. 2010 Dec 3;5(12):e15068. doi: 10.1371/journal.pone.0015068. PLoS One. 2010. PMID: 21151926 Free PMC article.

9

GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets.

Mpindi JP, Sara H, Haapa-Paananen S, Kilpinen S, Pisto T, Bucher E, Ojala K, Iljin K, Vainio P, Björkman M, Gupta S, Kohonen P, Nees M, Kallioniemi O. Mpindi JP, et al. Among authors: kilpinen s. PLoS One. 2011 Feb 18;6(2):e17259. doi: 10.1371/journal.pone.0017259. PLoS One. 2011. PMID: 21365010 Free PMC article.

10

Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.

Kilpinen SK, Ojala KA, Kallioniemi OP. Kilpinen SK, et al. BioData Min. 2011 Mar 31;4:5. doi: 10.1186/1756-0381-4-5. BioData Min. 2011. PMID: 21453538 Free PMC article.

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