Fraenkel E - Search Results

1

Unbiased, genome-wide in vivo mapping of transcriptional regulatory elements reveals sex differences in chromatin structure associated with sex-specific liver gene expression.

Ling G, Sugathan A, Mazor T, Fraenkel E, Waxman DJ. Ling G, et al. Among authors: fraenkel e. Mol Cell Biol. 2010 Dec;30(23):5531-44. doi: 10.1128/MCB.00601-10. Epub 2010 Sep 27. Mol Cell Biol. 2010. PMID: 20876297 Free PMC article.

2

NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency.

Matlock AD, Vaibhav V, Holewinski R, Venkatraman V, Dardov V, Manalo DM, Shelley B, Ornelas L, Banuelos M, Mandefro B, Escalante-Chong R, Li J, Finkbeiner S, Fraenkel E, Rothstein J, Thompson L, Sareen D, Svendsen CN; NIH NeuroLINCS Consortium; Van Eyk JE. Matlock AD, et al. Among authors: fraenkel e. Sci Data. 2023 Jan 11;10(1):24. doi: 10.1038/s41597-022-01687-7. Sci Data. 2023. PMID: 36631473 Free PMC article.

3

Adaptive bias correction for improved subseasonal forecasting.

Mouatadid S, Orenstein P, Flaspohler G, Cohen J, Oprescu M, Fraenkel E, Mackey L. Mouatadid S, et al. Among authors: fraenkel e. Nat Commun. 2023 Jun 15;14(1):3482. doi: 10.1038/s41467-023-38874-y. Nat Commun. 2023. PMID: 37321988 Free PMC article.

4

Assembly of a functional beta interferon enhanceosome is dependent on ATF-2-c-jun heterodimer orientation.

Falvo JV, Parekh BS, Lin CH, Fraenkel E, Maniatis T. Falvo JV, et al. Among authors: fraenkel e. Mol Cell Biol. 2000 Jul;20(13):4814-25. doi: 10.1128/MCB.20.13.4814-4825.2000. Mol Cell Biol. 2000. PMID: 10848607 Free PMC article.

5

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E. Macisaac KD, et al. Among authors: fraenkel e. Bioinformatics. 2006 Feb 15;22(4):423-9. doi: 10.1093/bioinformatics/bti815. Epub 2005 Dec 6. Bioinformatics. 2006. PMID: 16332710

6

Core transcriptional regulatory circuitry in human hepatocytes.

Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA. Odom DT, et al. Among authors: fraenkel e. Mol Syst Biol. 2006;2:2006.0017. doi: 10.1038/msb4100059. Epub 2006 May 2. Mol Syst Biol. 2006. PMID: 16738562 Free PMC article.

7

Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis.

Yu M, Riva L, Xie H, Schindler Y, Moran TB, Cheng Y, Yu D, Hardison R, Weiss MJ, Orkin SH, Bernstein BE, Fraenkel E, Cantor AB. Yu M, et al. Among authors: fraenkel e. Mol Cell. 2009 Nov 25;36(4):682-95. doi: 10.1016/j.molcel.2009.11.002. Mol Cell. 2009. PMID: 19941827 Free PMC article.

8

A quantitative model of transcriptional regulation reveals the influence of binding location on expression.

MacIsaac KD, Lo KA, Gordon W, Motola S, Mazor T, Fraenkel E. MacIsaac KD, et al. Among authors: fraenkel e. PLoS Comput Biol. 2010 Apr 29;6(4):e1000773. doi: 10.1371/journal.pcbi.1000773. PLoS Comput Biol. 2010. PMID: 20442865 Free PMC article.

9

Sequence analysis of chromatin immunoprecipitation data for transcription factors.

Macisaac KD, Fraenkel E. Macisaac KD, et al. Among authors: fraenkel e. Methods Mol Biol. 2010;674:179-93. doi: 10.1007/978-1-60761-854-6_11. Methods Mol Biol. 2010. PMID: 20827592 Free PMC article.

10

Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors.

Yu M, Mazor T, Huang H, Huang HT, Kathrein KL, Woo AJ, Chouinard CR, Labadorf A, Akie TE, Moran TB, Xie H, Zacharek S, Taniuchi I, Roeder RG, Kim CF, Zon LI, Fraenkel E, Cantor AB. Yu M, et al. Among authors: fraenkel e. Mol Cell. 2012 Feb 10;45(3):330-43. doi: 10.1016/j.molcel.2011.11.032. Mol Cell. 2012. PMID: 22325351 Free PMC article.

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