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mrsFAST: a cache-oblivious algorithm for short-read mapping.
Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. Hach F, et al. Among authors: alkan c. Nat Methods. 2010 Aug;7(8):576-7. doi: 10.1038/nmeth0810-576. Nat Methods. 2010. PMID: 20676076 Free PMC article. No abstract available.
The structure and evolution of centromeric transition regions within the human genome.
She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, Miller W, Schwartz S, Eichler EE. She X, et al. Among authors: alkan c. Nature. 2004 Aug 19;430(7002):857-64. doi: 10.1038/nature02806. Nature. 2004. PMID: 15318213
Manipulating multiple sequence alignments via MaM and WebMaM.
Alkan C, Tüzün E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC. Alkan C, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8. doi: 10.1093/nar/gki406. Nucleic Acids Res. 2005. PMID: 15980474 Free PMC article.
taveRNA: a web suite for RNA algorithms and applications.
Aksay C, Salari R, Karakoc E, Alkan C, Sahinalp SC. Aksay C, et al. Among authors: alkan c. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W325-9. doi: 10.1093/nar/gkm303. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488837 Free PMC article.
144 results