Xie G - Search Results

1

Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

Lo CC, Bonner CA, Xie G, D'Souza M, Jensen RA. Lo CC, et al. Among authors: xie g. Microbiol Mol Biol Rev. 2009 Dec;73(4):594-651. doi: 10.1128/MMBR.00024-09. Microbiol Mol Biol Rev. 2009. PMID: 19946135 Free PMC article. Review.

2

Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy.

Xie G, Bonner CA, Song J, Keyhani NO, Jensen RA. Xie G, et al. BMC Biol. 2004 Jun 23;2:15. doi: 10.1186/1741-7007-2-15. BMC Biol. 2004. PMID: 15214963 Free PMC article.

3

The alternative translational profile that underlies the immune-evasive state of persistence in Chlamydiaceae exploits differential tryptophan contents of the protein repertoire.

Lo CC, Xie G, Bonner CA, Jensen RA. Lo CC, et al. Among authors: xie g. Microbiol Mol Biol Rev. 2012 Jun;76(2):405-43. doi: 10.1128/MMBR.05013-11. Microbiol Mol Biol Rev. 2012. PMID: 22688818 Free PMC article. Review.

4

Ancient origin of the tryptophan operon and the dynamics of evolutionary change.

Xie G, Keyhani NO, Bonner CA, Jensen RA. Xie G, et al. Microbiol Mol Biol Rev. 2003 Sep;67(3):303-42, table of contents. doi: 10.1128/MMBR.67.3.303-342.2003. Microbiol Mol Biol Rev. 2003. PMID: 12966138 Free PMC article. Review.

5

Significance of two distinct types of tryptophan synthase beta chain in Bacteria, Archaea and higher plants.

Xie G, Forst C, Bonner C, Jensen RA. Xie G, et al. Genome Biol. 2002;3(1):RESEARCH0004. doi: 10.1186/gb-2001-3-1-research0004. Epub 2001 Dec 14. Genome Biol. 2002. PMID: 11806827 Free PMC article.

6

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

Hu B, Xie G, Lo CC, Starkenburg SR, Chain PS. Hu B, et al. Among authors: xie g. Brief Funct Genomics. 2011 Nov;10(6):322-33. doi: 10.1093/bfgp/elr042. Brief Funct Genomics. 2011. PMID: 22199376 Review.

7

Recruiting human microbiome shotgun data to site-specific reference genomes.

Xie G, Lo CC, Scholz M, Chain PS. Xie G, et al. PLoS One. 2014 Jan 15;9(1):e84963. doi: 10.1371/journal.pone.0084963. eCollection 2014. PLoS One. 2014. PMID: 24454771 Free PMC article.

8

Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria.

Xie G, Bonner CA, Brettin T, Gottardo R, Keyhani NO, Jensen RA. Xie G, et al. Genome Biol. 2003;4(2):R14. doi: 10.1186/gb-2003-4-2-r14. Epub 2003 Jan 29. Genome Biol. 2003. PMID: 12620124 Free PMC article.

9

Genomics for key players in the N cycle from guinea pigs to the next frontier.

Chain PS, Xie G, Starkenburg SR, Scholz MB, Beckloff N, Lo CC, Davenport KW, Reitenga KG, Daligault HE, Detter JC, Freitas TA, Gleasner CD, Green LD, Han CS, McMurry KK, Meincke LJ, Shen X, Zeytun A. Chain PS, et al. Among authors: xie g. Methods Enzymol. 2011;496:289-318. doi: 10.1016/B978-0-12-386489-5.00012-9. Methods Enzymol. 2011. PMID: 21514469 Review.

10

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium. Ahmed SA, et al. Among authors: xie g. PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1. PLoS One. 2012. PMID: 23133618 Free PMC article.

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