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Page 1
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.
Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, Pearson O, Wu Z, Chang J, Kaul R, Hoffmaster AR, Brettin TS, Robison RA, Mayo M, Gee JE, Tan P, Currie BJ, Keim P. Pearson T, et al. Among authors: chang j. BMC Biol. 2009 Nov 18;7:78. doi: 10.1186/1741-7007-7-78. BMC Biol. 2009. PMID: 19922616 Free PMC article.
Evolution of Burkholderia pseudomallei in recurrent melioidosis.
Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, Peacock SJ, Kaul R, Miller SI, Manoil C, Jacobs MA. Hayden HS, et al. Among authors: chang j. PLoS One. 2012;7(5):e36507. doi: 10.1371/journal.pone.0036507. Epub 2012 May 15. PLoS One. 2012. PMID: 22615773 Free PMC article.
Closing gaps in the human genome with fosmid resources generated from multiple individuals.
Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, Levy R, Morrison VA, Sprague J, Jewett D, Buckley D, Subramaniam S, Chang J, Smith DR, Olson MV, Eichler EE, Kaul R. Bovee D, et al. Among authors: chang j. Nat Genet. 2008 Jan;40(1):96-101. doi: 10.1038/ng.2007.34. Epub 2007 Dec 23. Nat Genet. 2008. PMID: 18157130
Genome sequence of the fish pathogen Renibacterium salmoninarum suggests reductive evolution away from an environmental Arthrobacter ancestor.
Wiens GD, Rockey DD, Wu Z, Chang J, Levy R, Crane S, Chen DS, Capri GR, Burnett JR, Sudheesh PS, Schipma MJ, Burd H, Bhattacharyya A, Rhodes LD, Kaul R, Strom MS. Wiens GD, et al. Among authors: chang j. J Bacteriol. 2008 Nov;190(21):6970-82. doi: 10.1128/JB.00721-08. Epub 2008 Aug 22. J Bacteriol. 2008. PMID: 18723615 Free PMC article.
Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.
Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, Chang J, Beskhlebnaya V, Waldor MK, Samadpour M, Whittam TS, Kaul R, Brittnacher M, Miller SI. Kulasekara BR, et al. Among authors: chang j. Infect Immun. 2009 Sep;77(9):3713-21. doi: 10.1128/IAI.00198-09. Epub 2009 Jun 29. Infect Immun. 2009. PMID: 19564389 Free PMC article.
Ancient haplotypes of the HLA Class II region.
Raymond CK, Kas A, Paddock M, Qiu R, Zhou Y, Subramanian S, Chang J, Palmieri A, Haugen E, Kaul R, Olson MV. Raymond CK, et al. Among authors: chang j. Genome Res. 2005 Sep;15(9):1250-7. doi: 10.1101/gr.3554305. Genome Res. 2005. PMID: 16140993 Free PMC article.
Targeted, haplotype-resolved resequencing of long segments of the human genome.
Raymond CK, Subramanian S, Paddock M, Qiu R, Deodato C, Palmieri A, Chang J, Radke T, Haugen E, Kas A, Waring D, Bovee D, Stacy R, Kaul R, Olson MV. Raymond CK, et al. Among authors: chang j. Genomics. 2005 Dec;86(6):759-66. doi: 10.1016/j.ygeno.2005.08.013. Epub 2005 Oct 24. Genomics. 2005. PMID: 16249066 Free article.
Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.
Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R. Hayden HS, et al. Among authors: chang j. Genomics. 2008 Jun;91(6):530-7. doi: 10.1016/j.ygeno.2008.02.005. Epub 2008 Apr 29. Genomics. 2008. PMID: 18445516 Free PMC article.
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.
Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, Haugen E, Bovee D, Zhou Y, Chang J, Levy R, Lim R, Gillett W, Guenthener D, Kang A, Shaffer SA, Taylor G, Chen J, Gallis B, D'Argenio DA, Forsman M, Olson MV, Goodlett DR, Kaul R, Miller SI, Brittnacher MJ. Rohmer L, et al. Among authors: chang j. Genome Biol. 2007;8(6):R102. doi: 10.1186/gb-2007-8-6-r102. Genome Biol. 2007. PMID: 17550600 Free PMC article.
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