Ranish JA - Search Results

1

Quantitative proteomics identifies oxidant-induced, AtMPK6-dependent changes in Arabidopsis thaliana protein profiles.

Miles GP, Samuel MA, Ranish JA, Donohoe SM, Sperrazzo GM, Ellis BE. Miles GP, et al. Among authors: ranish ja. Plant Signal Behav. 2009 Jun;4(6):497-505. doi: 10.4161/psb.4.6.8538. Epub 2009 Jun 17. Plant Signal Behav. 2009. PMID: 19816138 Free PMC article.

2

The study of macromolecular complexes by quantitative proteomics.

Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R. Ranish JA, et al. Nat Genet. 2003 Mar;33(3):349-55. doi: 10.1038/ng1101. Epub 2003 Feb 18. Nat Genet. 2003. PMID: 12590263

3

Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics.

Brand M, Ranish JA, Kummer NT, Hamilton J, Igarashi K, Francastel C, Chi TH, Crabtree GR, Aebersold R, Groudine M. Brand M, et al. Among authors: ranish ja. Nat Struct Mol Biol. 2004 Jan;11(1):73-80. doi: 10.1038/nsmb713. Epub 2003 Dec 29. Nat Struct Mol Biol. 2004. PMID: 14718926

4

Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry.

Zhou H, Ranish JA, Watts JD, Aebersold R. Zhou H, et al. Among authors: ranish ja. Nat Biotechnol. 2002 May;20(5):512-5. doi: 10.1038/nbt0502-512. Nat Biotechnol. 2002. PMID: 11981568

5

Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

Ranish JA, Hahn S, Lu Y, Yi EC, Li XJ, Eng J, Aebersold R. Ranish JA, et al. Nat Genet. 2004 Jul;36(7):707-13. doi: 10.1038/ng1385. Epub 2004 Jun 27. Nat Genet. 2004. PMID: 15220919

6

Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition.

Ranish JA, Brand M, Aebersold R. Ranish JA, et al. Methods Mol Biol. 2007;359:17-35. doi: 10.1007/978-1-59745-255-7_2. Methods Mol Biol. 2007. PMID: 17484108

7

Computational prediction of proteotypic peptides for quantitative proteomics.

Mallick P, Schirle M, Chen SS, Flory MR, Lee H, Martin D, Ranish J, Raught B, Schmitt R, Werner T, Kuster B, Aebersold R. Mallick P, et al. Nat Biotechnol. 2007 Jan;25(1):125-31. doi: 10.1038/nbt1275. Epub 2006 Dec 31. Nat Biotechnol. 2007. PMID: 17195840

8

Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures.

Yan W, Luo J, Robinson M, Eng J, Aebersold R, Ranish J. Yan W, et al. Mol Cell Proteomics. 2011 Mar;10(3):M110.005611. doi: 10.1074/mcp.M110.005611. Epub 2010 Dec 17. Mol Cell Proteomics. 2011. PMID: 21169564 Free PMC article.

9

Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins.

Mirzaei H, Knijnenburg TA, Kim B, Robinson M, Picotti P, Carter GW, Li S, Dilworth DJ, Eng JK, Aitchison JD, Shmulevich I, Galitski T, Aebersold R, Ranish J. Mirzaei H, et al. Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3645-50. doi: 10.1073/pnas.1216918110. Epub 2013 Feb 6. Proc Natl Acad Sci U S A. 2013. PMID: 23388641 Free PMC article.

10

Abundance ratio-dependent proteomic analysis by mass spectrometry.

Griffin TJ, Lock CM, Li XJ, Patel A, Chervetsova I, Lee H, Wright ME, Ranish JA, Chen SS, Aebersold R. Griffin TJ, et al. Among authors: ranish ja. Anal Chem. 2003 Feb 15;75(4):867-74. doi: 10.1021/ac026127j. Anal Chem. 2003. PMID: 12622378

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