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Homology modelling and spectroscopy, a never-ending love story.
Venselaar H, Joosten RP, Vroling B, Baakman CA, Hekkelman ML, Krieger E, Vriend G. Venselaar H, et al. Among authors: baakman ca. Eur Biophys J. 2010 Mar;39(4):551-63. doi: 10.1007/s00249-009-0531-0. Epub 2009 Aug 29. Eur Biophys J. 2010. PMID: 19718498 Free PMC article. Review.
GPCRDB: information system for G protein-coupled receptors.
Vroling B, Sanders M, Baakman C, Borrmann A, Verhoeven S, Klomp J, Oliveira L, de Vlieg J, Vriend G. Vroling B, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D309-19. doi: 10.1093/nar/gkq1009. Epub 2010 Nov 2. Nucleic Acids Res. 2011. PMID: 21045054 Free PMC article.
A series of PDB-related databanks for everyday needs.
Touw WG, Baakman C, Black J, te Beek TA, Krieger E, Joosten RP, Vriend G. Touw WG, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D364-8. doi: 10.1093/nar/gku1028. Epub 2014 Oct 28. Nucleic Acids Res. 2015. PMID: 25352545 Free PMC article.
NewProt - a protein engineering portal.
Schwarte A, Genz M, Skalden L, Nobili A, Vickers C, Melse O, Kuipers R, Joosten HJ, Stourac J, Bendl J, Black J, Haase P, Baakman C, Damborsky J, Bornscheuer U, Vriend G, Venselaar H. Schwarte A, et al. Protein Eng Des Sel. 2017 Jun 1;30(6):441-447. doi: 10.1093/protein/gzx024. Protein Eng Des Sel. 2017. PMID: 28475759
Facilities that make the PDB data collection more powerful.
Lange J, Baakman C, Pistorius A, Krieger E, Hooft R, Joosten RP, Vriend G. Lange J, et al. Protein Sci. 2020 Jan;29(1):330-344. doi: 10.1002/pro.3788. Epub 2019 Dec 2. Protein Sci. 2020. PMID: 31724231 Free PMC article.