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Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).
Xia Q, Guo Y, Zhang Z, Li D, Xuan Z, Li Z, Dai F, Li Y, Cheng D, Li R, Cheng T, Jiang T, Becquet C, Xu X, Liu C, Zha X, Fan W, Lin Y, Shen Y, Jiang L, Jensen J, Hellmann I, Tang S, Zhao P, Xu H, Yu C, Zhang G, Li J, Cao J, Liu S, He N, Zhou Y, Liu H, Zhao J, Ye C, Du Z, Pan G, Zhao A, Shao H, Zeng W, Wu P, Li C, Pan M, Li J, Yin X, Li D, Wang J, Zheng H, Wang W, Zhang X, Li S, Yang H, Lu C, Nielsen R, Zhou Z, Wang J, Xiang Z, Wang J. Xia Q, et al. Among authors: yang h. Science. 2009 Oct 16;326(5951):433-6. doi: 10.1126/science.1176620. Epub 2009 Aug 27. Science. 2009. PMID: 19713493 Free PMC article.
A draft sequence of the rice genome (Oryza sativa L. ssp. indica).
Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H. Yu J, et al. Among authors: yang h, yang j. Science. 2002 Apr 5;296(5565):79-92. doi: 10.1126/science.1068037. Science. 2002. PMID: 11935017
A comparison of rice chloroplast genomes.
Tang J, Xia H, Cao M, Zhang X, Zeng W, Hu S, Tong W, Wang J, Wang J, Yu J, Yang H, Zhu L. Tang J, et al. Among authors: yang h. Plant Physiol. 2004 May;135(1):412-20. doi: 10.1104/pp.103.031245. Epub 2004 Apr 30. Plant Physiol. 2004. PMID: 15122023 Free PMC article.
A draft sequence for the genome of the domesticated silkworm (Bombyx mori).
Xia Q, Zhou Z, Lu C, Cheng D, Dai F, Li B, Zhao P, Zha X, Cheng T, Chai C, Pan G, Xu J, Liu C, Lin Y, Qian J, Hou Y, Wu Z, Li G, Pan M, Li C, Shen Y, Lan X, Yuan L, Li T, Xu H, Yang G, Wan Y, Zhu Y, Yu M, Shen W, Wu D, Xiang Z, Yu J, Wang J, Li R, Shi J, Li H, Li G, Su J, Wang X, Li G, Zhang Z, Wu Q, Li J, Zhang Q, Wei N, Xu J, Sun H, Dong L, Liu D, Zhao S, Zhao X, Meng Q, Lan F, Huang X, Li Y, Fang L, Li C, Li D, Sun Y, Zhang Z, Yang Z, Huang Y, Xi Y, Qi Q, He D, Huang H, Zhang X, Wang Z, Li W, Cao Y, Yu Y, Yu H, Li J, Ye J, Chen H, Zhou Y, Liu B, Wang J, Ye J, Ji H, Li S, Ni P, Zhang J, Zhang Y, Zheng H, Mao B, Wang W, Ye C, Li S, Wang J, Wong GK, Yang H; Biology Analysis Group. Xia Q, et al. Among authors: yang g, yang h, yang z. Science. 2004 Dec 10;306(5703):1937-40. doi: 10.1126/science.1102210. Science. 2004. PMID: 15591204
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms.
Wong GK, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J, Ni P, Li S, Ran L, Li H, Zhang J, Li R, Li S, Zheng H, Lin W, Li G, Wang X, Zhao W, Li J, Ye C, Dai M, Ruan J, Zhou Y, Li Y, He X, Zhang Y, Wang J, Huang X, Tong W, Chen J, Ye J, Chen C, Wei N, Li G, Dong L, Lan F, Sun Y, Zhang Z, Yang Z, Yu Y, Huang Y, He D, Xi Y, Wei D, Qi Q, Li W, Shi J, Wang M, Xie F, Wang J, Zhang X, Wang P, Zhao Y, Li N, Yang N, Dong W, Hu S, Zeng C, Zheng W, Hao B, Hillier LW, Yang SP, Warren WC, Wilson RK, Brandström M, Ellegren H, Crooijmans RP, van der Poel JJ, Bovenhuis H, Groenen MA, Ovcharenko I, Gordon L, Stubbs L, Lucas S, Glavina T, Aerts A, Kaiser P, Rothwell L, Young JR, Rogers S, Walker BA, van Hateren A, Kaufman J, Bumstead N, Lamont SJ, Zhou H, Hocking PM, Morrice D, de Koning DJ, Law A, Bartley N, Burt DW, Hunt H, Cheng HH, Gunnarsson U, Wahlberg P, Andersson L, Kindlund E, Tammi MT, Andersson B, Webber C, Ponting CP, Overton IM, Boardman PE, Tang H, Hubbard SJ, Wilson SA, Yu J, Wang J, Yang H; International Chicken Polymorphism Map Consortium. Wong GK, et al. Among authors: yang sp, yang n, yang x, yang h, yang z. Nature. 2004 Dec 9;432(7018):717-22. doi: 10.1038/nature03156. Nature. 2004. PMID: 15592405 Free PMC article.
SilkDB: a knowledgebase for silkworm biology and genomics.
Wang J, Xia Q, He X, Dai M, Ruan J, Chen J, Yu G, Yuan H, Hu Y, Li R, Feng T, Ye C, Lu C, Wang J, Li S, Wong GK, Yang H, Wang J, Xiang Z, Zhou Z, Yu J. Wang J, et al. Among authors: yang h. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D399-402. doi: 10.1093/nar/gki116. Nucleic Acids Res. 2005. PMID: 15608225 Free PMC article.
ChickVD: a sequence variation database for the chicken genome.
Wang J, He X, Ruan J, Dai M, Chen J, Zhang Y, Hu Y, Ye C, Li S, Cong L, Fang L, Liu B, Li S, Wang J, Burt DW, Wong GK, Yu J, Yang H, Wang J. Wang J, et al. Among authors: yang h. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D438-41. doi: 10.1093/nar/gki092. Nucleic Acids Res. 2005. PMID: 15608233 Free PMC article.
Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome.
Zhou Y, Tang J, Walker MG, Zhang X, Wang J, Hu S, Xu H, Deng Y, Dong J, Ye L, Lin L, Li J, Wang X, Xu H, Pan Y, Lin W, Tian W, Liu J, Wei L, Liu S, Yang H, Yu J, Wang J. Zhou Y, et al. Among authors: yang h. Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42. doi: 10.1016/s1672-0229(03)01005-2. Genomics Proteomics Bioinformatics. 2003. PMID: 15626331 Free PMC article.
Origin and evolution of new exons in rodents.
Wang W, Zheng H, Yang S, Yu H, Li J, Jiang H, Su J, Yang L, Zhang J, McDermott J, Samudrala R, Wang J, Yang H, Yu J, Kristiansen K, Wong GK, Wang J. Wang W, et al. Among authors: yang s, yang l, yang h. Genome Res. 2005 Sep;15(9):1258-64. doi: 10.1101/gr.3929705. Epub 2005 Aug 18. Genome Res. 2005. PMID: 16109974 Free PMC article.
The diploid genome sequence of an Asian individual.
Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, Liang H, Du Z, Li D, Zhao Y, Hu Y, Yang Z, Zheng H, Hellmann I, Inouye M, Pool J, Yi X, Zhao J, Duan J, Zhou Y, Qin J, Ma L, Li G, Yang Z, Zhang G, Yang B, Yu C, Liang F, Li W, Li S, Li D, Ni P, Ruan J, Li Q, Zhu H, Liu D, Lu Z, Li N, Guo G, Zhang J, Ye J, Fang L, Hao Q, Chen Q, Liang Y, Su Y, San A, Ping C, Yang S, Chen F, Li L, Zhou K, Zheng H, Ren Y, Yang L, Gao Y, Yang G, Li Z, Feng X, Kristiansen K, Wong GK, Nielsen R, Durbin R, Bolund L, Zhang X, Li S, Yang H, Wang J. Wang J, et al. Among authors: yang s, yang b, yang l, yang g, yang h, yang z. Nature. 2008 Nov 6;456(7218):60-5. doi: 10.1038/nature07484. Nature. 2008. PMID: 18987735 Free PMC article.
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