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Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.
Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, Chang J, Beskhlebnaya V, Waldor MK, Samadpour M, Whittam TS, Kaul R, Brittnacher M, Miller SI. Kulasekara BR, et al. Among authors: chang j. Infect Immun. 2009 Sep;77(9):3713-21. doi: 10.1128/IAI.00198-09. Epub 2009 Jun 29. Infect Immun. 2009. PMID: 19564389 Free PMC article.
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.
Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, Haugen E, Bovee D, Zhou Y, Chang J, Levy R, Lim R, Gillett W, Guenthener D, Kang A, Shaffer SA, Taylor G, Chen J, Gallis B, D'Argenio DA, Forsman M, Olson MV, Goodlett DR, Kaul R, Miller SI, Brittnacher MJ. Rohmer L, et al. Among authors: chang j. Genome Biol. 2007;8(6):R102. doi: 10.1186/gb-2007-8-6-r102. Genome Biol. 2007. PMID: 17550600 Free PMC article.
Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.
Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R. Hayden HS, et al. Among authors: chang j. Genomics. 2008 Jun;91(6):530-7. doi: 10.1016/j.ygeno.2008.02.005. Epub 2008 Apr 29. Genomics. 2008. PMID: 18445516 Free PMC article.
Evolution of Burkholderia pseudomallei in recurrent melioidosis.
Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, Peacock SJ, Kaul R, Miller SI, Manoil C, Jacobs MA. Hayden HS, et al. Among authors: chang j. PLoS One. 2012;7(5):e36507. doi: 10.1371/journal.pone.0036507. Epub 2012 May 15. PLoS One. 2012. PMID: 22615773 Free PMC article.
Closing gaps in the human genome with fosmid resources generated from multiple individuals.
Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, Levy R, Morrison VA, Sprague J, Jewett D, Buckley D, Subramaniam S, Chang J, Smith DR, Olson MV, Eichler EE, Kaul R. Bovee D, et al. Among authors: chang j. Nat Genet. 2008 Jan;40(1):96-101. doi: 10.1038/ng.2007.34. Epub 2007 Dec 23. Nat Genet. 2008. PMID: 18157130
Ancient haplotypes of the HLA Class II region.
Raymond CK, Kas A, Paddock M, Qiu R, Zhou Y, Subramanian S, Chang J, Palmieri A, Haugen E, Kaul R, Olson MV. Raymond CK, et al. Among authors: chang j. Genome Res. 2005 Sep;15(9):1250-7. doi: 10.1101/gr.3554305. Genome Res. 2005. PMID: 16140993 Free PMC article.
Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.
Svensson K, Sjödin A, Byström M, Granberg M, Brittnacher MJ, Rohmer L, Jacobs MA, Sims-Day EH, Levy R, Zhou Y, Hayden HS, Lim R, Chang J, Guenthener D, Kang A, Haugen E, Gillett W, Kaul R, Forsman M, Larsson P, Johansson A. Svensson K, et al. Among authors: chang j. J Bacteriol. 2012 Dec;194(24):6965-6. doi: 10.1128/JB.01040-12. J Bacteriol. 2012. PMID: 23209222 Free PMC article.
Targeted, haplotype-resolved resequencing of long segments of the human genome.
Raymond CK, Subramanian S, Paddock M, Qiu R, Deodato C, Palmieri A, Chang J, Radke T, Haugen E, Kas A, Waring D, Bovee D, Stacy R, Kaul R, Olson MV. Raymond CK, et al. Among authors: chang j. Genomics. 2005 Dec;86(6):759-66. doi: 10.1016/j.ygeno.2005.08.013. Epub 2005 Oct 24. Genomics. 2005. PMID: 16249066 Free article.
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