Carriero N - Search Results

1

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.

Rozowsky J, Euskirchen G, Auerbach RK, Zhang ZD, Gibson T, Bjornson R, Carriero N, Snyder M, Gerstein MB. Rozowsky J, et al. Among authors: carriero n. Nat Biotechnol. 2009 Jan;27(1):66-75. doi: 10.1038/nbt.1518. Epub 2009 Jan 4. Nat Biotechnol. 2009. PMID: 19122651 Free PMC article.

2

Paired-end mapping reveals extensive structural variation in the human genome.

Korbel JO, Urban AE, Affourtit JP, Godwin B, Grubert F, Simons JF, Kim PM, Palejev D, Carriero NJ, Du L, Taillon BE, Chen Z, Tanzer A, Saunders AC, Chi J, Yang F, Carter NP, Hurles ME, Weissman SM, Harkins TT, Gerstein MB, Egholm M, Snyder M. Korbel JO, et al. Science. 2007 Oct 19;318(5849):420-6. doi: 10.1126/science.1149504. Epub 2007 Sep 27. Science. 2007. PMID: 17901297 Free PMC article.

3

An efficient pseudomedian filter for tiling microrrays.

Royce TE, Carriero NJ, Gerstein MB. Royce TE, et al. BMC Bioinformatics. 2007 Jun 7;8:186. doi: 10.1186/1471-2105-8-186. BMC Bioinformatics. 2007. PMID: 17555595 Free PMC article.

4

Integrated pseudogene annotation for human chromosome 22: evidence for transcription.

Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. Zheng D, et al. Among authors: carriero n. J Mol Biol. 2005 May 27;349(1):27-45. doi: 10.1016/j.jmb.2005.02.072. Epub 2005 Apr 2. J Mol Biol. 2005. PMID: 15876366

5

De novo mutations in histone-modifying genes in congenital heart disease.

Zaidi S, Choi M, Wakimoto H, Ma L, Jiang J, Overton JD, Romano-Adesman A, Bjornson RD, Breitbart RE, Brown KK, Carriero NJ, Cheung YH, Deanfield J, DePalma S, Fakhro KA, Glessner J, Hakonarson H, Italia MJ, Kaltman JR, Kaski J, Kim R, Kline JK, Lee T, Leipzig J, Lopez A, Mane SM, Mitchell LE, Newburger JW, Parfenov M, Pe'er I, Porter G, Roberts AE, Sachidanandam R, Sanders SJ, Seiden HS, State MW, Subramanian S, Tikhonova IR, Wang W, Warburton D, White PS, Williams IA, Zhao H, Seidman JG, Brueckner M, Chung WK, Gelb BD, Goldmuntz E, Seidman CE, Lifton RP. Zaidi S, et al. Nature. 2013 Jun 13;498(7453):220-3. doi: 10.1038/nature12141. Epub 2013 May 12. Nature. 2013. PMID: 23665959 Free PMC article.

6

A "polyORFomic" analysis of prokaryote genomes using disabled-homology filtering reveals conserved but undiscovered short ORFs.

Harrison PM, Carriero N, Liu Y, Gerstein M. Harrison PM, et al. Among authors: carriero n. J Mol Biol. 2003 Nov 7;333(5):885-92. doi: 10.1016/j.jmb.2003.09.016. J Mol Biol. 2003. PMID: 14583187

7

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data.

Korbel JO, Abyzov A, Mu XJ, Carriero N, Cayting P, Zhang Z, Snyder M, Gerstein MB. Korbel JO, et al. Among authors: carriero n. Genome Biol. 2009 Feb 23;10(2):R23. doi: 10.1186/gb-2009-10-2-r23. Genome Biol. 2009. PMID: 19236709 Free PMC article.

8

Comparative analysis of processed pseudogenes in the mouse and human genomes.

Zhang Z, Carriero N, Gerstein M. Zhang Z, et al. Among authors: carriero n. Trends Genet. 2004 Feb;20(2):62-7. doi: 10.1016/j.tig.2003.12.005. Trends Genet. 2004. PMID: 14746985 Review.

9

Hinge Atlas: relating protein sequence to sites of structural flexibility.

Flores SC, Lu LJ, Yang J, Carriero N, Gerstein MB. Flores SC, et al. Among authors: carriero n. BMC Bioinformatics. 2007 May 22;8:167. doi: 10.1186/1471-2105-8-167. BMC Bioinformatics. 2007. PMID: 17519025 Free PMC article.

10

X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers.

Bjornson RD, Carriero NJ, Colangelo C, Shifman M, Cheung KH, Miller PL, Williams K. Bjornson RD, et al. J Proteome Res. 2008 Jan;7(1):293-9. doi: 10.1021/pr0701198. Epub 2007 Sep 29. J Proteome Res. 2008. PMID: 17902638 Free PMC article.

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