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HMDB: a knowledgebase for the human metabolome.
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B, Hau DD, Psychogios N, Dong E, Bouatra S, Mandal R, Sinelnikov I, Xia J, Jia L, Cruz JA, Lim E, Sobsey CA, Shrivastava S, Huang P, Liu P, Fang L, Peng J, Fradette R, Cheng D, Tzur D, Clements M, Lewis A, De Souza A, Zuniga A, Dawe M, Xiong Y, Clive D, Greiner R, Nazyrova A, Shaykhutdinov R, Li L, Vogel HJ, Forsythe I. Wishart DS, et al. Among authors: liu p. Nucleic Acids Res. 2009 Jan;37(Database issue):D603-10. doi: 10.1093/nar/gkn810. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953024 Free PMC article.
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs.
Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Knox C, et al. Among authors: liu p. Nucleic Acids Res. 2011 Jan;39(Database issue):D1035-41. doi: 10.1093/nar/gkq1126. Epub 2010 Nov 8. Nucleic Acids Res. 2011. PMID: 21059682 Free PMC article.
YMDB: the Yeast Metabolome Database.
Jewison T, Knox C, Neveu V, Djoumbou Y, Guo AC, Lee J, Liu P, Mandal R, Krishnamurthy R, Sinelnikov I, Wilson M, Wishart DS. Jewison T, et al. Among authors: liu p. Nucleic Acids Res. 2012 Jan;40(Database issue):D815-20. doi: 10.1093/nar/gkr916. Epub 2011 Nov 7. Nucleic Acids Res. 2012. PMID: 22064855 Free PMC article.
HMDB 3.0--The Human Metabolome Database in 2013.
Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, Djoumbou Y, Mandal R, Aziat F, Dong E, Bouatra S, Sinelnikov I, Arndt D, Xia J, Liu P, Yallou F, Bjorndahl T, Perez-Pineiro R, Eisner R, Allen F, Neveu V, Greiner R, Scalbert A. Wishart DS, et al. Among authors: liu y, liu p. Nucleic Acids Res. 2013 Jan;41(Database issue):D801-7. doi: 10.1093/nar/gks1065. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161693 Free PMC article.
The human urine metabolome.
Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, Bjorndahl TC, Krishnamurthy R, Saleem F, Liu P, Dame ZT, Poelzer J, Huynh J, Yallou FS, Psychogios N, Dong E, Bogumil R, Roehring C, Wishart DS. Bouatra S, et al. Among authors: liu p. PLoS One. 2013 Sep 4;8(9):e73076. doi: 10.1371/journal.pone.0073076. eCollection 2013. PLoS One. 2013. PMID: 24023812 Free PMC article.
SMPDB 2.0: big improvements to the Small Molecule Pathway Database.
Jewison T, Su Y, Disfany FM, Liang Y, Knox C, Maciejewski A, Poelzer J, Huynh J, Zhou Y, Arndt D, Djoumbou Y, Liu Y, Deng L, Guo AC, Han B, Pon A, Wilson M, Rafatnia S, Liu P, Wishart DS. Jewison T, et al. Among authors: liu y, liu p. Nucleic Acids Res. 2014 Jan;42(Database issue):D478-84. doi: 10.1093/nar/gkt1067. Epub 2013 Nov 6. Nucleic Acids Res. 2014. PMID: 24203708 Free PMC article.
Metabolomic prediction of fetal congenital heart defect in the first trimester.
Bahado-Singh RO, Ertl R, Mandal R, Bjorndahl TC, Syngelaki A, Han B, Dong E, Liu PB, Alpay-Savasan Z, Wishart DS, Nicolaides KH. Bahado-Singh RO, et al. Am J Obstet Gynecol. 2014 Sep;211(3):240.e1-240.e14. doi: 10.1016/j.ajog.2014.03.056. Epub 2014 Apr 1. Am J Obstet Gynecol. 2014. PMID: 24704061
Accurate, fully-automated NMR spectral profiling for metabolomics.
Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS. Ravanbakhsh S, et al. Among authors: liu p. PLoS One. 2015 May 27;10(5):e0124219. doi: 10.1371/journal.pone.0124219. eCollection 2015. PLoS One. 2015. PMID: 26017271 Free PMC article.
Correction: Accurate, Fully-Automated NMR Spectral Profiling for Metabolomics.
Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS. Ravanbakhsh S, et al. Among authors: liu p. PLoS One. 2015 Jul 29;10(7):e0132873. doi: 10.1371/journal.pone.0132873. eCollection 2015. PLoS One. 2015. PMID: 26222058 Free PMC article. No abstract available.
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