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Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS. Johnson DS, et al. Among authors: liu xs. Genome Res. 2008 Mar;18(3):393-403. doi: 10.1101/gr.7080508. Epub 2008 Feb 7. Genome Res. 2008. PMID: 18258921 Free PMC article.
CEAS: cis-regulatory element annotation system.
Ji X, Li W, Song J, Wei L, Liu XS. Ji X, et al. Among authors: liu xs. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W551-4. doi: 10.1093/nar/gkl322. Nucleic Acids Res. 2006. PMID: 16845068 Free PMC article.
Model-based analysis of tiling-arrays for ChIP-chip.
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.
Genome-wide analysis of estrogen receptor binding sites.
Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Carroll JS, et al. Among authors: liu xs. Nat Genet. 2006 Nov;38(11):1289-97. doi: 10.1038/ng1901. Epub 2006 Oct 1. Nat Genet. 2006. PMID: 17013392
1,113 results