Lathrop RH - Search Results

1

Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins.

Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Zeng J, et al. Among authors: lathrop rh. Nucleic Acids Res. 2008 Jan;36(1):e8. doi: 10.1093/nar/gkm1117. Epub 2007 Dec 17. Nucleic Acids Res. 2008. PMID: 18086703 Free PMC article.

2

Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants.

Danziger SA, Swamidass SJ, Zeng J, Dearth LR, Lu Q, Chen JH, Cheng J, Hoang VP, Saigo H, Luo R, Baldi P, Brachmann RK, Lathrop RH. Danziger SA, et al. Among authors: lathrop rh. IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):114-25. doi: 10.1109/TCBB.2006.22. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048398 Free PMC article.

3

Choosing where to look next in a mutation sequence space: Active Learning of informative p53 cancer rescue mutants.

Danziger SA, Zeng J, Wang Y, Brachmann RK, Lathrop RH. Danziger SA, et al. Among authors: lathrop rh. Bioinformatics. 2007 Jul 1;23(13):i104-14. doi: 10.1093/bioinformatics/btm166. Bioinformatics. 2007. PMID: 17646286 Free PMC article.

4

Heterogeneous biomedical database integration using a hybrid strategy: a p53 cancer research database.

Bichutskiy VY, Colman R, Brachmann RK, Lathrop RH. Bichutskiy VY, et al. Among authors: lathrop rh. Cancer Inform. 2007 Feb 20;2:277-87. Cancer Inform. 2007. PMID: 19458771 Free PMC article.

5

All-codon scanning identifies p53 cancer rescue mutations.

Baronio R, Danziger SA, Hall LV, Salmon K, Hatfield GW, Lathrop RH, Kaiser P. Baronio R, et al. Among authors: lathrop rh. Nucleic Acids Res. 2010 Nov;38(20):7079-88. doi: 10.1093/nar/gkq571. Epub 2010 Jun 25. Nucleic Acids Res. 2010. PMID: 20581117 Free PMC article.

6

Predicting oligonucleotide-directed mutagenesis failures in protein engineering.

Wassman CD, Tam PY, Lathrop RH, Weiss GA. Wassman CD, et al. Among authors: lathrop rh. Nucleic Acids Res. 2004 Dec 7;32(21):6407-13. doi: 10.1093/nar/gkh977. Print 2004. Nucleic Acids Res. 2004. PMID: 15585664 Free PMC article.

7

The role of DNA deformation energy at individual base steps for the identification of DNA-protein binding sites.

Steffen NR, Murphy SD, Lathrop RH, Opel ML, Tolleri L, Hatfield GW. Steffen NR, et al. Among authors: lathrop rh. Genome Inform. 2002;13:153-62. Genome Inform. 2002. PMID: 14571384

8

Information-theoretic dissection of pairwise contact potentials.

Cline MS, Karplus K, Lathrop RH, Smith TF, Rogers RG Jr, Haussler D. Cline MS, et al. Among authors: lathrop rh. Proteins. 2002 Oct 1;49(1):7-14. doi: 10.1002/prot.10198. Proteins. 2002. PMID: 12211011

9

Predicting positive p53 cancer rescue regions using Most Informative Positive (MIP) active learning.

Danziger SA, Baronio R, Ho L, Hall L, Salmon K, Hatfield GW, Kaiser P, Lathrop RH. Danziger SA, et al. Among authors: lathrop rh. PLoS Comput Biol. 2009 Sep;5(9):e1000498. doi: 10.1371/journal.pcbi.1000498. Epub 2008 Sep 4. PLoS Comput Biol. 2009. PMID: 19756158 Free PMC article.

10

DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions.

Aeling KA, Steffen NR, Johnson M, Hatfield GW, Lathrop RH, Senear DF. Aeling KA, et al. Among authors: lathrop rh. IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):117-25. doi: 10.1109/TCBB.2007.1000. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17277419

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