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The integrated microbial genomes (IMG) system.
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavromatis K, Ivanova N, Kyrpides NC. Markowitz VM, et al. Among authors: lykidis a. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D344-8. doi: 10.1093/nar/gkj024. Nucleic Acids Res. 2006. PMID: 16381883 Free PMC article.
An experimental metagenome data management and analysis system.
Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, Anderson I, Mavromatis K, Kunin V, Garcia Martin H, Dubchak I, Hugenholtz P, Kyrpides NC. Markowitz VM, et al. Among authors: lykidis a. Bioinformatics. 2006 Jul 15;22(14):e359-67. doi: 10.1093/bioinformatics/btl217. Bioinformatics. 2006. PMID: 16873494
IMG/M: a data management and analysis system for metagenomes.
Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, Dalevi D, Chen IM, Grechkin Y, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Hugenholtz P, Kyrpides NC. Markowitz VM, et al. Among authors: lykidis a. Nucleic Acids Res. 2008 Jan;36(Database issue):D534-8. doi: 10.1093/nar/gkm869. Epub 2007 Oct 11. Nucleic Acids Res. 2008. PMID: 17932063 Free PMC article.
The integrated microbial genomes system: an expanding comparative analysis resource.
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: lykidis a. Nucleic Acids Res. 2010 Jan;38(Database issue):D382-90. doi: 10.1093/nar/gkp887. Epub 2009 Oct 28. Nucleic Acids Res. 2010. PMID: 19864254 Free PMC article.
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights.
Bhattacharyya A, Stilwagen S, Reznik G, Feil H, Feil WS, Anderson I, Bernal A, D'Souza M, Ivanova N, Kapatral V, Larsen N, Los T, Lykidis A, Selkov E Jr, Walunas TL, Purcell A, Edwards RA, Hawkins T, Haselkorn R, Overbeek R, Kyrpides NC, Predki PF. Bhattacharyya A, et al. Among authors: lykidis a. Genome Res. 2002 Oct;12(10):1556-63. doi: 10.1101/gr.370702. Genome Res. 2002. PMID: 12368248 Free PMC article.
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. Wu D, et al. Among authors: lykidis a. Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656. Nature. 2009. PMID: 20033048 Free PMC article.
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains.
Bhattacharyya A, Stilwagen S, Ivanova N, D'Souza M, Bernal A, Lykidis A, Kapatral V, Anderson I, Larsen N, Los T, Reznik G, Selkov E Jr, Walunas TL, Feil H, Feil WS, Purcell A, Lassez JL, Hawkins TL, Haselkorn R, Overbeek R, Predki PF, Kyrpides NC. Bhattacharyya A, et al. Among authors: lykidis a. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12403-8. doi: 10.1073/pnas.132393999. Epub 2002 Aug 30. Proc Natl Acad Sci U S A. 2002. PMID: 12205291 Free PMC article.
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000.
Feil H, Feil WS, Chain P, Larimer F, DiBartolo G, Copeland A, Lykidis A, Trong S, Nolan M, Goltsman E, Thiel J, Malfatti S, Loper JE, Lapidus A, Detter JC, Land M, Richardson PM, Kyrpides NC, Ivanova N, Lindow SE. Feil H, et al. Among authors: lykidis a. Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):11064-9. doi: 10.1073/pnas.0504930102. Epub 2005 Jul 25. Proc Natl Acad Sci U S A. 2005. PMID: 16043691 Free PMC article.
48 results