Al-Shahrour F - Search Results

1

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A. Marti-Renom MA, et al. BMC Bioinformatics. 2007 May 22;8 Suppl 4(Suppl 4):S4. doi: 10.1186/1471-2105-8-S4-S4. BMC Bioinformatics. 2007. PMID: 17570147 Free PMC article.

2

DBAli tools: mining the protein structure space.

Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.

3

FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes.

Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Al-Shahrour F, et al. Bioinformatics. 2004 Mar 1;20(4):578-80. doi: 10.1093/bioinformatics/btg455. Epub 2004 Jan 22. Bioinformatics. 2004. PMID: 14990455

4

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.

Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Al-Shahrour F, et al. Bioinformatics. 2005 Jul 1;21(13):2988-93. doi: 10.1093/bioinformatics/bti457. Epub 2005 Apr 19. Bioinformatics. 2005. PMID: 15840702

5

From genes to functional classes in the study of biological systems.

Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. Al-Shahrour F, et al. BMC Bioinformatics. 2007 Apr 3;8:114. doi: 10.1186/1471-2105-8-114. BMC Bioinformatics. 2007. PMID: 17407596 Free PMC article.

6

A function-centric approach to the biological interpretation of microarray time-series.

Minguez P, Al-Shahrour F, Dopazo J. Minguez P, et al. Genome Inform. 2006;17(2):57-66. Genome Inform. 2006. PMID: 17503379

7

Functional profiling of microarray experiments using text-mining derived bioentities.

Minguez P, Al-Shahrour F, Montaner D, Dopazo J. Minguez P, et al. Bioinformatics. 2007 Nov 15;23(22):3098-9. doi: 10.1093/bioinformatics/btm445. Epub 2007 Sep 13. Bioinformatics. 2007. PMID: 17855415

8

Expression and microarrays.

Dopazo J, Al-Shahrour F. Dopazo J, et al. Methods Mol Biol. 2008;453:245-55. doi: 10.1007/978-1-60327-429-6_12. Methods Mol Biol. 2008. PMID: 18712307

9

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks.

Minguez P, Götz S, Montaner D, Al-Shahrour F, Dopazo J. Minguez P, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W109-14. doi: 10.1093/nar/gkp402. Epub 2009 May 19. Nucleic Acids Res. 2009. PMID: 19454602 Free PMC article.

10

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Al-Shahrour F, Minguez P, Tárraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J. Al-Shahrour F, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W472-6. doi: 10.1093/nar/gkl172. Nucleic Acids Res. 2006. PMID: 16845052 Free PMC article.

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