Sali A - Search Results

1

Determination of cancer risk associated with germ line BRCA1 missense variants by functional analysis.

Carvalho MA, Marsillac SM, Karchin R, Manoukian S, Grist S, Swaby RF, Urmenyi TP, Rondinelli E, Silva R, Gayol L, Baumbach L, Sutphen R, Pickard-Brzosowicz JL, Nathanson KL, Sali A, Goldgar D, Couch FJ, Radice P, Monteiro AN. Carvalho MA, et al. Among authors: sali a. Cancer Res. 2007 Feb 15;67(4):1494-501. doi: 10.1158/0008-5472.CAN-06-3297. Cancer Res. 2007. PMID: 17308087 Free PMC article.

2

Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition.

Mirkovic N, Marti-Renom MA, Weber BL, Sali A, Monteiro AN. Mirkovic N, et al. Among authors: sali a. Cancer Res. 2004 Jun 1;64(11):3790-7. doi: 10.1158/0008-5472.CAN-03-3009. Cancer Res. 2004. PMID: 15172985

3

Functional impact of missense variants in BRCA1 predicted by supervised learning.

Karchin R, Monteiro AN, Tavtigian SV, Carvalho MA, Sali A. Karchin R, et al. Among authors: sali a. PLoS Comput Biol. 2007 Feb 16;3(2):e26. doi: 10.1371/journal.pcbi.0030026. Epub 2006 Dec 28. PLoS Comput Biol. 2007. PMID: 17305420 Free PMC article.

4

Classifying Variants of Undetermined Significance in BRCA2 with protein likelihood ratios.

Karchin R, Agarwal M, Sali A, Couch F, Beattie MS. Karchin R, et al. Among authors: sali a. Cancer Inform. 2008;6:203-16. doi: 10.4137/cin.s618. Epub 2008 Apr 18. Cancer Inform. 2008. PMID: 19043619 Free PMC article.

5

Protein interactions and disease phenotypes in the ABC transporter superfamily.

Kelly L, Karchin R, Sali A. Kelly L, et al. Among authors: sali a. Pac Symp Biocomput. 2007:51-63. Pac Symp Biocomput. 2007. PMID: 17990484 Free article.

6

Improving functional annotation of non-synonomous SNPs with information theory.

Karchin R, Kelly L, Sali A. Karchin R, et al. Among authors: sali a. Pac Symp Biocomput. 2005:397-408. doi: 10.1142/9789812702456_0038. Pac Symp Biocomput. 2005. PMID: 15759645 Free article.

7

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.

Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A. Karchin R, et al. Among authors: sali a. Bioinformatics. 2005 Jun 15;21(12):2814-20. doi: 10.1093/bioinformatics/bti442. Epub 2005 Apr 12. Bioinformatics. 2005. PMID: 15827081

8

MODBASE, a database of annotated comparative protein structure models and associated resources.

Pieper U, Eswar N, Webb BM, Eramian D, Kelly L, Barkan DT, Carter H, Mankoo P, Karchin R, Marti-Renom MA, Davis FP, Sali A. Pieper U, et al. Among authors: sali a. Nucleic Acids Res. 2009 Jan;37(Database issue):D347-54. doi: 10.1093/nar/gkn791. Epub 2008 Oct 23. Nucleic Acids Res. 2009. PMID: 18948282 Free PMC article.

9

Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.

Kelly L, Fukushima H, Karchin R, Gow JM, Chinn LW, Pieper U, Segal MR, Kroetz DL, Sali A. Kelly L, et al. Among authors: sali a. Protein Sci. 2010 Nov;19(11):2110-21. doi: 10.1002/pro.491. Protein Sci. 2010. PMID: 20799350 Free PMC article.

10

MODBASE: a database of annotated comparative protein structure models and associated resources.

Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A. Pieper U, et al. Among authors: sali a. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D291-5. doi: 10.1093/nar/gkj059. Nucleic Acids Res. 2006. PMID: 16381869 Free PMC article.

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