Yu H - Search Results

1

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Krogan NJ, et al. Among authors: yu h. Nature. 2006 Mar 30;440(7084):637-43. doi: 10.1038/nature04670. Epub 2006 Mar 22. Nature. 2006. PMID: 16554755

2

Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M. Qian J, et al. Among authors: yu h. J Mol Biol. 2001 Dec 14;314(5):1053-66. doi: 10.1006/jmbi.2000.5219. J Mol Biol. 2001. PMID: 11743722

3

Genomic analysis of gene expression relationships in transcriptional regulatory networks.

Yu H, Luscombe NM, Qian J, Gerstein M. Yu H, et al. Trends Genet. 2003 Aug;19(8):422-7. doi: 10.1016/S0168-9525(03)00175-6. Trends Genet. 2003. PMID: 12902159

4

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.

Qian J, Lin J, Luscombe NM, Yu H, Gerstein M. Qian J, et al. Among authors: yu h. Bioinformatics. 2003 Oct 12;19(15):1917-26. doi: 10.1093/bioinformatics/btg347. Bioinformatics. 2003. PMID: 14555624

5

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. Jansen R, et al. Among authors: yu h. Science. 2003 Oct 17;302(5644):449-53. doi: 10.1126/science.1087361. Science. 2003. PMID: 14564010

6

Relationship between gene co-expression and probe localization on microarray slides.

Kluger Y, Yu H, Qian J, Gerstein M. Kluger Y, et al. Among authors: yu h. BMC Genomics. 2003 Dec 10;4(1):49. doi: 10.1186/1471-2164-4-49. BMC Genomics. 2003. PMID: 14667251 Free PMC article.

7

TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.

Yu H, Zhu X, Greenbaum D, Karro J, Gerstein M. Yu H, et al. Nucleic Acids Res. 2004 Jan 14;32(1):328-37. doi: 10.1093/nar/gkh164. Print 2004. Nucleic Acids Res. 2004. PMID: 14724320 Free PMC article.

8

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M. Yu H, et al. Genome Res. 2004 Jun;14(6):1107-18. doi: 10.1101/gr.1774904. Genome Res. 2004. PMID: 15173116 Free PMC article.

9

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Luscombe NM, et al. Among authors: yu h. Nature. 2004 Sep 16;431(7006):308-12. doi: 10.1038/nature02782. Nature. 2004. PMID: 15372033 Free article.

10

Assessing the limits of genomic data integration for predicting protein networks.

Lu LJ, Xia Y, Paccanaro A, Yu H, Gerstein M. Lu LJ, et al. Among authors: yu h. Genome Res. 2005 Jul;15(7):945-53. doi: 10.1101/gr.3610305. Genome Res. 2005. PMID: 15998909 Free PMC article.

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