Vaske C - Search Results

1

Gene prediction and verification in a compact genome with numerous small introns.

Tenney AE, Brown RH, Vaske C, Lodge JK, Doering TL, Brent MR. Tenney AE, et al. Among authors: vaske c. Genome Res. 2004 Nov;14(11):2330-5. doi: 10.1101/gr.2816704. Epub 2004 Oct 12. Genome Res. 2004. PMID: 15479946 Free PMC article.

2

Voltage-gated Na+ channel SCN5A is a key regulator of a gene transcriptional network that controls colon cancer invasion.

House CD, Vaske CJ, Schwartz AM, Obias V, Frank B, Luu T, Sarvazyan N, Irby R, Strausberg RL, Hales TG, Stuart JM, Lee NH. House CD, et al. Cancer Res. 2010 Sep 1;70(17):6957-67. doi: 10.1158/0008-5472.CAN-10-1169. Epub 2010 Jul 22. Cancer Res. 2010. PMID: 20651255 Free PMC article.

3

A factor graph nested effects model to identify networks from genetic perturbations.

Vaske CJ, House C, Luu T, Frank B, Yeang CH, Lee NH, Stuart JM. Vaske CJ, et al. PLoS Comput Biol. 2009 Jan;5(1):e1000274. doi: 10.1371/journal.pcbi.1000274. Epub 2009 Jan 30. PLoS Comput Biol. 2009. PMID: 19180177 Free PMC article.

4

The UCSC Interaction Browser: multidimensional data views in pathway context.

Wong CK, Vaske CJ, Ng S, Sanborn JZ, Benz SC, Haussler D, Stuart JM. Wong CK, et al. Among authors: vaske cj. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W218-24. doi: 10.1093/nar/gkt473. Epub 2013 Jun 8. Nucleic Acids Res. 2013. PMID: 23748957 Free PMC article.

5

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM.

Vaske CJ, Benz SC, Sanborn JZ, Earl D, Szeto C, Zhu J, Haussler D, Stuart JM. Vaske CJ, et al. Bioinformatics. 2010 Jun 15;26(12):i237-45. doi: 10.1093/bioinformatics/btq182. Bioinformatics. 2010. PMID: 20529912 Free PMC article.

6

The UCSC Cancer Genomics Browser: update 2011.

Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J. Sanborn JZ, et al. Among authors: vaske cj. Nucleic Acids Res. 2011 Jan;39(Database issue):D951-9. doi: 10.1093/nar/gkq1113. Epub 2010 Nov 8. Nucleic Acids Res. 2011. PMID: 21059681 Free PMC article.

7

The Cancer Genome Atlas Pan-Cancer analysis project.

Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.

8

Comprehensive molecular characterization of human colon and rectal cancer.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. Nature. 2012. PMID: 22810696 Free PMC article.

9

Comprehensive genomic characterization of squamous cell lung cancers.

Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2012 Sep 27;489(7417):519-25. doi: 10.1038/nature11404. Epub 2012 Sep 9. Nature. 2012. PMID: 22960745 Free PMC article.

10

FOXM1 cistrome predicts breast cancer metastatic outcome better than FOXM1 expression levels or tumor proliferation index.

Yau C, Meyer L, Benz S, Vaske C, Scott G, Egan B, Labhart P, Pourmand N, Benz CC. Yau C, et al. Among authors: vaske c. Breast Cancer Res Treat. 2015 Nov;154(1):23-32. doi: 10.1007/s10549-015-3589-7. Epub 2015 Oct 12. Breast Cancer Res Treat. 2015. PMID: 26456572

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