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205 results

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Page 1
Reconstructing tumor genome architectures.
Raphael BJ, Volik S, Collins C, Pevzner PA. Raphael BJ, et al. Bioinformatics. 2003 Oct;19 Suppl 2:ii162-71. doi: 10.1093/bioinformatics/btg1074. Bioinformatics. 2003. PMID: 14534186
Reconstructing tumor amplisomes.
Raphael BJ, Pevzner PA. Raphael BJ, et al. Bioinformatics. 2004 Aug 4;20 Suppl 1:i265-73. doi: 10.1093/bioinformatics/bth931. Bioinformatics. 2004. PMID: 15262808
Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C. Volik S, et al. Among authors: raphael bj. Genome Res. 2006 Mar;16(3):394-404. doi: 10.1101/gr.4247306. Epub 2006 Feb 3. Genome Res. 2006. PMID: 16461635 Free PMC article.
Identifying repeat domains in large genomes.
Zhi D, Raphael BJ, Price AL, Tang H, Pevzner PA. Zhi D, et al. Among authors: raphael bj. Genome Biol. 2006;7(1):R7. doi: 10.1186/gb-2006-7-1-r7. Epub 2006 Jan 31. Genome Biol. 2006. PMID: 16507140 Free PMC article.
Microinversions in mammalian evolution.
Chaisson MJ, Raphael BJ, Pevzner PA. Chaisson MJ, et al. Among authors: raphael bj. Proc Natl Acad Sci U S A. 2006 Dec 26;103(52):19824-9. doi: 10.1073/pnas.0603984103. Epub 2006 Dec 22. Proc Natl Acad Sci U S A. 2006. PMID: 17189424 Free PMC article.
A sequence-based survey of the complex structural organization of tumor genomes.
Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC. Raphael BJ, et al. Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25. Genome Biol. 2008. PMID: 18364049 Free PMC article.
Structural variation analysis with strobe reads.
Ritz A, Bashir A, Raphael BJ. Ritz A, et al. Among authors: raphael bj. Bioinformatics. 2010 May 15;26(10):1291-8. doi: 10.1093/bioinformatics/btq153. Epub 2010 Apr 8. Bioinformatics. 2010. PMID: 20378554
205 results