Shepherd A - Search Results

1

The CATH database: an extended protein family resource for structural and functional genomics.

Pearl FM, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA. Pearl FM, et al. Among authors: shepherd a. Nucleic Acids Res. 2003 Jan 1;31(1):452-5. doi: 10.1093/nar/gkg062. Nucleic Acids Res. 2003. PMID: 12520050 Free PMC article.

2

Prediction of the location and type of beta-turns in proteins using neural networks.

Shepherd AJ, Gorse D, Thornton JM. Shepherd AJ, et al. Protein Sci. 1999 May;8(5):1045-55. doi: 10.1110/ps.8.5.1045. Protein Sci. 1999. PMID: 10338015 Free PMC article.

3

VIDA: a virus database system for the organization of animal virus genome open reading frames.

Albà MM, Lee D, Pearl FM, Shepherd AJ, Martin N, Orengo CA, Kellam P. Albà MM, et al. Among authors: shepherd aj. Nucleic Acids Res. 2001 Jan 1;29(1):133-6. doi: 10.1093/nar/29.1.133. Nucleic Acids Res. 2001. PMID: 11125070 Free PMC article.

4

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: shepherd aj. Nucleic Acids Res. 2001 Jan 1;29(1):223-7. doi: 10.1093/nar/29.1.223. Nucleic Acids Res. 2001. PMID: 11125098 Free PMC article.

5

The CATH extended protein-family database: providing structural annotations for genome sequences.

Pearl FM, Lee D, Bray JE, Buchan DW, Shepherd AJ, Orengo CA. Pearl FM, et al. Among authors: shepherd aj. Protein Sci. 2002 Feb;11(2):233-44. doi: 10.1110/ps.16802. Protein Sci. 2002. PMID: 11790833 Free PMC article.

6

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA. Buchan DW, et al. Among authors: shepherd aj. Genome Res. 2002 Mar;12(3):503-14. doi: 10.1101/gr.213802. Genome Res. 2002. PMID: 11875040 Free PMC article.

7

Toward predicting protein topology: an approach to identifying beta hairpins.

de la Cruz X, Hutchinson EG, Shepherd A, Thornton JM. de la Cruz X, et al. Among authors: shepherd a. Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11157-62. doi: 10.1073/pnas.162376199. Epub 2002 Aug 12. Proc Natl Acad Sci U S A. 2002. PMID: 12177429 Free PMC article.

8

A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks.

Shepherd AJ, Gorse D, Thornton JM. Shepherd AJ, et al. Proteins. 2003 Feb 1;50(2):290-302. doi: 10.1002/prot.10290. Proteins. 2003. PMID: 12486723

9

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.

Shepherd AJ, Martin NJ, Johnson RG, Kellam P, Orengo CA. Shepherd AJ, et al. Bioinformatics. 2002 Dec;18(12):1666-72. doi: 10.1093/bioinformatics/18.12.1666. Bioinformatics. 2002. PMID: 12490452

10

A realistic assessment of methods for extracting gene/protein interactions from free text.

Kabiljo R, Clegg AB, Shepherd AJ. Kabiljo R, et al. BMC Bioinformatics. 2009 Jul 28;10:233. doi: 10.1186/1471-2105-10-233. BMC Bioinformatics. 2009. PMID: 19635172 Free PMC article.

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