Karplus K - Search Results

1

Information-theoretic dissection of pairwise contact potentials.

Cline MS, Karplus K, Lathrop RH, Smith TF, Rogers RG Jr, Haussler D. Cline MS, et al. Among authors: karplus k. Proteins. 2002 Oct 1;49(1):7-14. doi: 10.1002/prot.10198. Proteins. 2002. PMID: 12211011

2

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.

Karchin R, Cline M, Mandel-Gutfreund Y, Karplus K. Karchin R, et al. Among authors: karplus k. Proteins. 2003 Jun 1;51(4):504-14. doi: 10.1002/prot.10369. Proteins. 2003. PMID: 12784210

3

Evaluation of local structure alphabets based on residue burial.

Karchin R, Cline M, Karplus K. Karchin R, et al. Among authors: karplus k. Proteins. 2004 May 15;55(3):508-18. doi: 10.1002/prot.20008. Proteins. 2004. PMID: 15103615

4

Predicting protein structure using only sequence information.

Karplus K, Barrett C, Cline M, Diekhans M, Grate L, Hughey R. Karplus K, et al. Proteins. 1999;Suppl 3:121-5. doi: 10.1002/(sici)1097-0134(1999)37:3+<121::aid-prot16>3.3.co;2-h. Proteins. 1999. PMID: 10526360

5

Predicting protein structure using hidden Markov models.

Karplus K, Sjölander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L, Sander C. Karplus K, et al. Proteins. 1997;Suppl 1:134-9. doi: 10.1002/(sici)1097-0134(1997)1+<134::aid-prot18>3.3.co;2-q. Proteins. 1997. PMID: 9485505

6

What is the value added by human intervention in protein structure prediction?

Karplus K, Karchin R, Barrett C, Tu S, Cline M, Diekhans M, Grate L, Casper J, Hughey R. Karplus K, et al. Proteins. 2001;Suppl 5:86-91. doi: 10.1002/prot.10021. Proteins. 2001. PMID: 11835485

7

Classifying G-protein coupled receptors with support vector machines.

Karchin R, Karplus K, Haussler D. Karchin R, et al. Among authors: karplus k. Bioinformatics. 2002 Jan;18(1):147-59. doi: 10.1093/bioinformatics/18.1.147. Bioinformatics. 2002. PMID: 11836223

8

Predicting reliable regions in protein sequence alignments.

Cline M, Hughey R, Karplus K. Cline M, et al. Among authors: karplus k. Bioinformatics. 2002 Feb;18(2):306-14. doi: 10.1093/bioinformatics/18.2.306. Bioinformatics. 2002. PMID: 11847078

9

Contact prediction using mutual information and neural nets.

Shackelford G, Karplus K. Shackelford G, et al. Among authors: karplus k. Proteins. 2007;69 Suppl 8:159-64. doi: 10.1002/prot.21791. Proteins. 2007. PMID: 17932918

10

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.

Sjölander K, Karplus K, Brown M, Hughey R, Krogh A, Mian IS, Haussler D. Sjölander K, et al. Among authors: karplus k. Comput Appl Biosci. 1996 Aug;12(4):327-45. doi: 10.1093/bioinformatics/12.4.327. Comput Appl Biosci. 1996. PMID: 8902360

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