Raychaudhuri S - Search Results

1

Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis.

Kivi M, Liu X, Raychaudhuri S, Altman RB, Small PM. Kivi M, et al. Among authors: raychaudhuri s. J Clin Microbiol. 2002 Jun;40(6):2192-8. doi: 10.1128/JCM.40.6.2192-2198.2002. J Clin Microbiol. 2002. PMID: 12037086 Free PMC article.

2

Pattern recognition of genomic features with microarrays: site typing of Mycobacterium tuberculosis strains.

Raychaudhuri S, Stuart JM, Liu X, Small PM, Altman RB. Raychaudhuri S, et al. Proc Int Conf Intell Syst Mol Biol. 2000;8:286-95. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977090 Free PMC article.

3

Using text analysis to identify functionally coherent gene groups.

Raychaudhuri S, Schütze H, Altman RB. Raychaudhuri S, et al. Genome Res. 2002 Oct;12(10):1582-90. doi: 10.1101/gr.116402. Genome Res. 2002. PMID: 12368251 Free PMC article.

4

Basic microarray analysis: grouping and feature reduction.

Raychaudhuri S, Sutphin PD, Chang JT, Altman RB. Raychaudhuri S, et al. Trends Biotechnol. 2001 May;19(5):189-93. doi: 10.1016/s0167-7799(01)01599-2. Trends Biotechnol. 2001. PMID: 11301132 Review.

5

Whole-genome expression analysis: challenges beyond clustering.

Altman RB, Raychaudhuri S. Altman RB, et al. Among authors: raychaudhuri s. Curr Opin Struct Biol. 2001 Jun;11(3):340-7. doi: 10.1016/s0959-440x(00)00212-8. Curr Opin Struct Biol. 2001. PMID: 11406385 Review.

6

Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.

Raychaudhuri S, Chang JT, Sutphin PD, Altman RB. Raychaudhuri S, et al. Genome Res. 2002 Jan;12(1):203-14. doi: 10.1101/gr.199701. Genome Res. 2002. PMID: 11779846 Free PMC article.

7

The computational analysis of scientific literature to define and recognize gene expression clusters.

Raychaudhuri S, Chang JT, Imam F, Altman RB. Raychaudhuri S, et al. Nucleic Acids Res. 2003 Aug 1;31(15):4553-60. doi: 10.1093/nar/gkg636. Nucleic Acids Res. 2003. PMID: 12888516 Free PMC article.

8

Principal components analysis to summarize microarray experiments: application to sporulation time series.

Raychaudhuri S, Stuart JM, Altman RB. Raychaudhuri S, et al. Pac Symp Biocomput. 2000:455-66. doi: 10.1142/9789814447331_0043. Pac Symp Biocomput. 2000. PMID: 10902193 Free PMC article.

9

A literature-based method for assessing the functional coherence of a gene group.

Raychaudhuri S, Altman RB. Raychaudhuri S, et al. Bioinformatics. 2003 Feb 12;19(3):396-401. doi: 10.1093/bioinformatics/btg002. Bioinformatics. 2003. PMID: 12584126 Free PMC article.

10

Including biological literature improves homology search.

Chang JT, Raychaudhuri S, Altman RB. Chang JT, et al. Among authors: raychaudhuri s. Pac Symp Biocomput. 2001:374-83. doi: 10.1142/9789814447362_0037. Pac Symp Biocomput. 2001. PMID: 11262956 Free PMC article.

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