Seo TK - Search Results

1

A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times.

Seo TK, Thorne JL, Hasegawa M, Kishino H. Seo TK, et al. Bioinformatics. 2002 Jan;18(1):115-23. doi: 10.1093/bioinformatics/18.1.115. Bioinformatics. 2002. PMID: 11836219

2

Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences.

Seo TK, Kishino H. Seo TK, et al. Syst Biol. 2009 Apr;58(2):199-210. doi: 10.1093/sysbio/syp015. Epub 2009 Jun 29. Syst Biol. 2009. PMID: 20525578

3

Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach.

Seo TK, Thorne JL, Hasegawa M, Kishino H. Seo TK, et al. Genetics. 2002 Apr;160(4):1283-93. doi: 10.1093/genetics/160.4.1283. Genetics. 2002. PMID: 11973287 Free PMC article.

4

Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences.

Seo TK, Kishino H, Thorne JL. Seo TK, et al. Mol Biol Evol. 2004 Jul;21(7):1201-13. doi: 10.1093/molbev/msh088. Epub 2004 Mar 10. Mol Biol Evol. 2004. PMID: 15014159

5

Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data.

Seo TK, Kishino H, Thorne JL. Seo TK, et al. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4436-41. doi: 10.1073/pnas.0408313102. Epub 2005 Mar 11. Proc Natl Acad Sci U S A. 2005. PMID: 15764703 Free PMC article.

6

Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins.

Seo TK, Kishino H. Seo TK, et al. Syst Biol. 2008 Jun;57(3):367-77. doi: 10.1080/10635150802158670. Syst Biol. 2008. PMID: 18570032

7

Measuring Phylogenetic Information of Incomplete Sequence Data.

Seo TK, Gascuel O, Thorne JL. Seo TK, et al. Syst Biol. 2022 Apr 19;71(3):630-648. doi: 10.1093/sysbio/syab073. Syst Biol. 2022. PMID: 34469581 Free PMC article.

8

Rates of nucleotide substitution in Cornaceae (Cornales)-Pattern of variation and underlying causal factors.

Xiang QY, Thorne JL, Seo TK, Zhang W, Thomas DT, Ricklefs RE. Xiang QY, et al. Among authors: seo tk. Mol Phylogenet Evol. 2008 Oct;49(1):327-42. doi: 10.1016/j.ympev.2008.07.010. Epub 2008 Jul 19. Mol Phylogenet Evol. 2008. PMID: 18682295

9

Information Criteria for Comparing Partition Schemes.

Seo TK, Thorne JL. Seo TK, et al. Syst Biol. 2018 Jul 1;67(4):616-632. doi: 10.1093/sysbio/syx097. Syst Biol. 2018. PMID: 29309694 Free PMC article.

10

Correlations between alignment gaps and nucleotide substitution or amino acid replacement.

Seo TK, Redelings BD, Thorne JL. Seo TK, et al. Proc Natl Acad Sci U S A. 2022 Aug 23;119(34):e2204435119. doi: 10.1073/pnas.2204435119. Epub 2022 Aug 16. Proc Natl Acad Sci U S A. 2022. PMID: 35972964 Free PMC article.

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