Characteristics and Expression Analysis of the MYB-Related Subfamily Gene in Rosa chinensis

Int J Mol Sci. 2024 Nov 29;25(23):12854. doi: 10.3390/ijms252312854.

Abstract

MYB-related transcription factors (TFs) subfamily is a subfamily of MYB TFs, which are mainly involved in plant secondary metabolism, growth and development, and stress response. To explore the function of MYB-related subfamily genes in Rosa chinensis, this study systematically analyzed characters of the MYB-related subfamily members in R. chinensis with bioinformatic analysis using the genomic data of R. chinensis and investigated their expression characteristics using quantitative real-time PCR (qRT-PCR). The results show that 100 MYB-related proteins were identified in R. chinensis. Proteins are mainly found in the nucleus. Chromosome localization revealed that all MYB-related genes are mapped to seven chromosomes and are distributed in clusters. Collinear analysis shows that 13 pairs of MYB-related genes had a collinear relationship, indicating R. chinensis may have evolved its MYB-related subfamily gene through fragment duplication. The analysis of motifs and conserved domains shows that Motif 3 is the most conserved motif. There are numerous ABA and MeJA response elements in MYB-related genes. ABA and MeJA treatments significantly shortened the vase life of R. chinensis, while the flower diameter on day 3 was the largest, suggesting that ABA and MeJA might induce MYB-related gene expression during cut flower senescence. The expression of MYB-related genes is tissue specific, most of which show the highest expression levels in petals. Notably, among six plant growth regulator treatments, ABA treatment significantly increased RcMYB002 expression in R. chinensis, suggesting that RcMYB002 may be a crucial gene for ABA response. This study provides a reference for further research on the function of MYB-related genes in R. chinensis.

Keywords: MYB-related; Rosa chinensis; bioinformatics analysis; gene expression; plant growth regulator.

MeSH terms

  • Abscisic Acid / metabolism
  • Abscisic Acid / pharmacology
  • Chromosomes, Plant / genetics
  • Cyclopentanes / metabolism
  • Cyclopentanes / pharmacology
  • Flowers / genetics
  • Flowers / growth & development
  • Flowers / metabolism
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant*
  • Genes, myb
  • Multigene Family
  • Oxylipins / metabolism
  • Oxylipins / pharmacology
  • Phylogeny
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Rosa* / genetics
  • Rosa* / metabolism
  • Transcription Factors* / genetics
  • Transcription Factors* / metabolism

Substances

  • Plant Proteins
  • Transcription Factors
  • Cyclopentanes
  • Oxylipins
  • Abscisic Acid