Calcineurin-fusion facilitates cryo-EM structure determination of a Family A GPCR

Proc Natl Acad Sci U S A. 2024 Nov 26;121(48):e2414544121. doi: 10.1073/pnas.2414544121. Epub 2024 Nov 20.

Abstract

Advances in singe-particle cryo-electron microscopy (cryo-EM) have made it possible to solve the structures of numerous Family A and Family B G protein-coupled receptors (GPCRs) in complex with G proteins and arrestins, as well as several Family C GPCRs. Determination of these structures has been facilitated by the presence of large extramembrane components (such as G protein, arrestin, or Venus flytrap domains) in these complexes that aid in particle alignment during the processing of the cryo-EM data. In contrast, determination of the inactive state structure of Family A GPCRs is more challenging due to the relatively small size of the seven transmembrane domain (7TM) and to the surrounding detergent micelle that, in the absence of other features, make particle alignment impossible. Here, we describe an alternative protein engineering strategy where the heterodimeric protein calcineurin is fused to a GPCR by three points of attachment, the cytoplasmic ends of TM5, TM6, and TM7. This three-point attachment provides a more rigid link with the GPCR transmembrane domain that facilitates particle alignment during data processing, allowing us to determine the structures of the β2 adrenergic receptor (β2AR) in the apo, antagonist-bound, and agonist-bound states. We expect that this fusion strategy may have broad application in cryo-EM structural determination of other Family A GPCRs.

Keywords: GPCR; cryo-electron microscopy; inactive state; structure.

MeSH terms

  • Calcineurin* / chemistry
  • Calcineurin* / metabolism
  • Cryoelectron Microscopy* / methods
  • HEK293 Cells
  • Humans
  • Models, Molecular
  • Protein Conformation
  • Protein Domains
  • Receptors, Adrenergic, beta-2* / chemistry
  • Receptors, Adrenergic, beta-2* / metabolism
  • Receptors, Adrenergic, beta-2* / ultrastructure
  • Receptors, G-Protein-Coupled / chemistry
  • Receptors, G-Protein-Coupled / metabolism
  • Receptors, G-Protein-Coupled / ultrastructure
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Recombinant Fusion Proteins / ultrastructure

Substances

  • Calcineurin
  • Receptors, Adrenergic, beta-2
  • Receptors, G-Protein-Coupled
  • Recombinant Fusion Proteins
  • ADRB2 protein, human