An ATP detection system based on the enzyme reaction with biotin protein ligase

Anal Biochem. 2025 Jan:696:115698. doi: 10.1016/j.ab.2024.115698. Epub 2024 Oct 24.

Abstract

Adenosine triphosphate (ATP) is the energy currency of all living organisms and can be used as an indicator for cell proliferation and cytotoxicity. In the present work, we have developed a novel ATP detection system by combining the biotinylation reaction from archaeon Sulfolobus tokodaii with fluorescence resonance energy transfer (FRET). In biotinylation from S. tokodaii, an enzyme known as biotin protein ligase (BPL) forms a very stable complex with its product, biotinylated substrate protein (BCCP). Here, BPL and BCCP were fused to the fluorescent proteins Cerulean and Clover, respectively, and ATP detection was accomplished by monitoring the FRET signal between the two fluorescent proteins, since ATP is an essential component for biotinylation and the tight BPL-BCCP complex is formed only after biotinylation. Using this system, we have succeeded in detecting 5 nM of ATP by biotinylation reaction with 50 nM of each fusion protein. Our method has a characteristic that the signal does not decay for at least 2 h after the start of the reaction, unlike in the case of the luminescence-based assay with luciferase commonly used for the ATP detection. Thus, our system allows for ATP detection which is not significantly constrained by measurement timing.

Keywords: ATP detection; Biotinylation; Enzyme reaction; FRET; Fluorescent protein.

MeSH terms

  • Adenosine Triphosphate* / analysis
  • Adenosine Triphosphate* / metabolism
  • Archaeal Proteins / chemistry
  • Archaeal Proteins / metabolism
  • Biotin / chemistry
  • Biotin / metabolism
  • Biotinylation*
  • Carbon-Nitrogen Ligases / chemistry
  • Carbon-Nitrogen Ligases / metabolism
  • Fluorescence Resonance Energy Transfer* / methods
  • Sulfolobus / enzymology

Substances

  • Adenosine Triphosphate
  • Biotin
  • Archaeal Proteins
  • Carbon-Nitrogen Ligases