The IS Vsa3-ORF2- abh- tet(X4) circular intermediate-mediated transmission of tigecycline resistance in Escherichia coli isolates from duck farms

Front Cell Infect Microbiol. 2024 Aug 30:14:1444031. doi: 10.3389/fcimb.2024.1444031. eCollection 2024.

Abstract

Tigecycline is a last-resort drug used to treat serious infections caused by multidrug-resistant bacteria. tet(X4) is a recently discovered plasmid-mediated tigecycline resistance gene that confers high-level resistance to tigecycline and other tetracyclines. Since the first discovery of tet(X4) in 2019, it has spread rapidly worldwide, and as a consequence, tigecycline has become increasingly ineffective in the clinical treatment of multidrug-resistant infections. In this study, we identified and analyzed tet(X4)-positive Escherichia coli isolates from duck farms in Hunan Province, China. In total, 976 samples were collected from nine duck farms. Antimicrobial susceptibility testing and whole-genome sequencing (WGS) were performed to establish the phenotypes and genotypes of tet(X4)-positive isolates. In addition, the genomic characteristics and transferability of tet(X4) were determined based on bioinformatics analysis and conjugation. We accordingly detected an E. coli strain harboring tet(X4) and seven other resistance genes in duck feces. Multi-locus sequence typing analysis revealed that this isolate belonged to a new clone, and subsequent genetic analysis indicated that tet(X4) was carried in a 4608-bp circular intermediate, flanked by ISVsa3-ORF2-abh elements. Moreover, it exhibited transferability to E. coli C600 with a frequency of 10-5. The detection of tet(X4)-harboring E, coli strains on duck farms enhances our understanding of tigecycline resistance dynamics. The transferable nature of the circular intermediate of tet(X4) contributing to the spread of tigecycline resistance genes poses a substantial threat to healthcare. Consequently, vigilant monitoring and proactive measures are necessary to prevent their spread.

Keywords: Escherichia coli; antimicrobial drug resistance; duck; tet(X4); tigecycline.

MeSH terms

  • Animals
  • Anti-Bacterial Agents* / pharmacology
  • China
  • Drug Resistance, Bacterial / genetics
  • Drug Resistance, Multiple, Bacterial / genetics
  • Ducks* / microbiology
  • Escherichia coli Infections* / microbiology
  • Escherichia coli Infections* / veterinary
  • Escherichia coli Proteins / genetics
  • Escherichia coli* / drug effects
  • Escherichia coli* / genetics
  • Escherichia coli* / isolation & purification
  • Farms*
  • Feces / microbiology
  • Gene Transfer, Horizontal
  • Genotype
  • Microbial Sensitivity Tests
  • Multilocus Sequence Typing
  • Plasmids / genetics
  • Poultry Diseases / microbiology
  • Tigecycline* / pharmacology
  • Whole Genome Sequencing*

Substances

  • Anti-Bacterial Agents
  • Escherichia coli Proteins
  • Tigecycline

Grants and funding

The author(s) declare financial support was received for the research, authorship, and/or publication of this article. The Scientific Research Fund of the Hunan Provincial Education Department, China (Grant No. 22C0569); The Natural Science Foundation of Hunan Province (Grant No.2024JJ7516); National College Students Innovation and Entrepreneurship Training Program, China (Grant No. S202310545009); and National College Students Innovation and Entrepreneurship Training Program, Hunan province (Grant No. 3750).