LXR-dependent enhancer activation regulates the temporal organization of the liver's response to refeeding leading to lipogenic gene overshoot

PLoS Biol. 2024 Sep 6;22(9):e3002735. doi: 10.1371/journal.pbio.3002735. eCollection 2024 Sep.

Abstract

Transitions between the fed and fasted state are common in mammals. The liver orchestrates adaptive responses to feeding/fasting by transcriptionally regulating metabolic pathways of energy usage and storage. Transcriptional and enhancer dynamics following cessation of fasting (refeeding) have not been explored. We examined the transcriptional and chromatin events occurring upon refeeding in mice, including kinetic behavior and molecular drivers. We found that the refeeding response is temporally organized with the early response focused on ramping up protein translation while the later stages of refeeding drive a bifurcated lipid synthesis program. While both the cholesterol biosynthesis and lipogenesis pathways were inhibited during fasting, most cholesterol biosynthesis genes returned to their basal levels upon refeeding while most lipogenesis genes markedly overshoot above pre-fasting levels. Gene knockout, enhancer dynamics, and ChIP-seq analyses revealed that lipogenic gene overshoot is dictated by LXRα. These findings from unbiased analyses unravel the mechanism behind the long-known phenomenon of refeeding fat overshoot.

MeSH terms

  • Animals
  • Cholesterol / metabolism
  • Enhancer Elements, Genetic* / genetics
  • Fasting* / metabolism
  • Gene Expression Regulation
  • Lipogenesis
  • Liver X Receptors* / genetics
  • Liver X Receptors* / metabolism
  • Liver* / metabolism
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout

Substances

  • Cholesterol
  • Liver X Receptors
  • Nr1h3 protein, mouse

Grants and funding

This work was supported by the Canada-Israel Health Research Initiative, jointly funded by the Canadian Institutes of Health Research (cihr-irsc.gc.ca), the Israel Science Foundation (www.isf.org.il), the International Development Research Centre, Canada (https://idrc-crdi.ca/en) and the Azrieli Foundation (https://azrielifoundation.org/) to IG (#1469/19, 3533/19) and CLC (#109155-001) as well as the European Research Council (https://erc.europa.eu/homepage) to IG (ERC-StG #947907). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.