Three-dimensional (3D) printing is an emerging technology to develop devices on a large scale with potential application for electroanalysis. However, 3D-printed electrodes, in their native form, provide poor electrochemical response due to the presence of a high percentage of thermoplastic polymer in the conductive filaments. Therefore, surface treatments are usually required to remove the nonconductive material from the 3D-printed electrode surfaces, providing a dramatic improvement in the electroanalytical performance. However, these procedures are time-consuming, require bulky equipment, or even involve non-eco-friendly protocols. Herein, we demonstrated that portable and low-cost atmospheric air plasma jet pens can be used to activate electrodes additively manufactured using a commercial poly(lactic acid) filament containing carbon black as conductive filler, improving the electrochemical activity. Remarkable electrochemical results were obtained (voltammetric profile) using [Fe(CN)6]3-/4-, dopamine and [Ru(NH3)6]2+/3+ as redox probes. Microscopic, spectroscopic, and electrochemical techniques revealed that the air-plasma jet pen removes the excess PLA on the 3D-printed electrode surface, exposing the conductive carbon black particles and increasing the surface area. The performance of the treated electrode was evaluated by the quantification of capsaicin in pepper sauce samples, with a limit of detection of 3 nM, suitable for analysis of food samples. Recovery values from 94% to 101% were obtained for the analysis of spiked samples. The new treatment generated by a plasma jet pen is an alternative approach to improve the electrochemical activity of 3D-printed electrodes that present sluggish kinetics with great advantages over previous protocols, including low-cost, short time of treatment (2 min), environmentally friendly protocol (reagentless), and portability (hand-held pen).