The whole genome dataset of Ichthyscopus pollicaris

Tianxiang Gao; Wenyu Li; Yinquan Qu; Xingle Guo; Yiting Wang; Chenfeng Zhao; Fangrui Lou; Qi Liu

doi:10.1016/j.dib.2024.110704

The whole genome dataset of Ichthyscopus pollicaris

Data Brief. 2024 Jul 4:56:110704. doi: 10.1016/j.dib.2024.110704. eCollection 2024 Oct.

Authors

Tianxiang Gao¹, Wenyu Li¹, Yinquan Qu¹, Xingle Guo¹, Yiting Wang¹, Chenfeng Zhao¹, Fangrui Lou², Qi Liu³

Affiliations

¹ Fishery College, Zhejiang Ocean University, Zhoushan, Zhejiang 316022, China.
² School of Ocean, Yantai University, Yantai, Shandong 264005, China.
³ Wuhan Onemore-tech Co., Ltd, Wuhan, Hubei 430000, China.

Abstract

The classification of the Uranoscopidae species is controversial and the Ichthyscopus pollicaris belonging to Uranoscopidae was first reported in 2019. In the present study, the whole genome sequence of I. pollicaris were generated by PacBio and Illumina platforms for the first time. After de novo assembly and correction of the high-quality PacBio data, a 527.25 Mb I. pollicaris genome with an N50 length of 11.25 Mb was finally generated. Meanwhile, 170.41 Mb repeating sequence, 21,263 genes, 784 miRNAs, 2,225 tRNAs, 3004 rRNAs, and 1422 snRNAs were annotated in I. pollicaris genome. Furthermore, 3,168 single-copy orthologous genes were applied to reconstructed the phylogenetic relationship between I. pollicaris and other 11 species. The draft genome sequences have been deposited in NCBI database with the accession number of PRJNA1071810.

Keywords: Genome; Ichthyscopus pollicaris; Phylogenetic relationship; Third generation sequencing.