Universal cold RNA phase transitions

Proc Natl Acad Sci U S A. 2024 Aug 20;121(34):e2408313121. doi: 10.1073/pnas.2408313121. Epub 2024 Aug 16.

Abstract

RNA's diversity of structures and functions impacts all life forms since primordia. We use calorimetric force spectroscopy to investigate RNA folding landscapes in previously unexplored low-temperature conditions. We find that Watson-Crick RNA hairpins, the most basic secondary structure elements, undergo a glass-like transition below [Formula: see text]C where the heat capacity abruptly changes and the RNA folds into a diversity of misfolded structures. We hypothesize that an altered RNA biochemistry, determined by sequence-independent ribose-water interactions, outweighs sequence-dependent base pairing. The ubiquitous ribose-water interactions lead to universal RNA phase transitions below TG, such as maximum stability at [Formula: see text]C where water density is maximum, and cold denaturation at [Formula: see text]C. RNA cold biochemistry may have a profound impact on RNA function and evolution.

Keywords: RNA in the cold; RNA phase transitions; cold RNA misfolding; single-RNA force spectroscopy.

MeSH terms

  • Base Pairing
  • Cold Temperature*
  • Nucleic Acid Conformation*
  • Phase Transition*
  • RNA Folding
  • RNA Stability
  • RNA* / chemistry
  • Thermodynamics
  • Water / chemistry

Substances

  • RNA
  • Water