1-Deoxy-d-xylulose 5-phosphate reductoisomerase as target for anti Toxoplasma gondii agents: crystal structure, biochemical characterization and biological evaluation of inhibitors

Biochem J. 2024 Aug 21;481(16):1075-1096. doi: 10.1042/BCJ20240110.

Abstract

Toxoplasma gondii is a widely distributed apicomplexan parasite causing toxoplasmosis, a critical health issue for immunocompromised individuals and for congenitally infected foetuses. Current treatment options are limited in number and associated with severe side effects. Thus, novel anti-toxoplasma agents need to be identified and developed. 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) is considered the rate-limiting enzyme in the non-mevalonate pathway for the biosynthesis of the isoprenoid precursors isopentenyl pyrophosphate and dimethylallyl pyrophosphate in the parasite, and has been previously investigated for its key role as a novel drug target in some species, encompassing Plasmodia, Mycobacteria and Escherichia coli. In this study, we present the first crystal structure of T. gondii DXR (TgDXR) in a tertiary complex with the inhibitor fosmidomycin and the cofactor NADPH in dimeric conformation at 2.5 Å resolution revealing the inhibitor binding mode. In addition, we biologically characterize reverse α-phenyl-β-thia and β-oxa fosmidomycin analogues and show that some derivatives are strong inhibitors of TgDXR which also, in contrast with fosmidomycin, inhibit the growth of T. gondii in vitro. Here, ((3,4-dichlorophenyl)((2-(hydroxy(methyl)amino)-2-oxoethyl)thio)methyl)phosphonic acid was identified as the most potent anti T. gondii compound. These findings will enable the future design and development of more potent anti-toxoplasma DXR inhibitors.

Keywords: Toxoplasma gondii; DXR; DXR inhibitors; SAXS; anti-infective; crystal structure; enzymatic assay; fosmidomycin; growth inhibition; parasite.

MeSH terms

  • Aldose-Ketose Isomerases* / antagonists & inhibitors
  • Aldose-Ketose Isomerases* / chemistry
  • Aldose-Ketose Isomerases* / genetics
  • Aldose-Ketose Isomerases* / metabolism
  • Crystallography, X-Ray
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Fosfomycin* / analogs & derivatives
  • Fosfomycin* / chemistry
  • Fosfomycin* / pharmacology
  • Humans
  • Models, Molecular
  • Multienzyme Complexes* / antagonists & inhibitors
  • Multienzyme Complexes* / chemistry
  • Multienzyme Complexes* / metabolism
  • NADP / chemistry
  • NADP / metabolism
  • Oxidoreductases / antagonists & inhibitors
  • Oxidoreductases / chemistry
  • Oxidoreductases / metabolism
  • Protozoan Proteins / antagonists & inhibitors
  • Protozoan Proteins / chemistry
  • Protozoan Proteins / genetics
  • Protozoan Proteins / metabolism
  • Toxoplasma* / drug effects
  • Toxoplasma* / enzymology

Substances

  • Aldose-Ketose Isomerases
  • 1-deoxy-D-xylulose 5-phosphate reductoisomerase
  • Fosfomycin
  • Multienzyme Complexes
  • fosmidomycin
  • Enzyme Inhibitors
  • Protozoan Proteins
  • NADP
  • Oxidoreductases