DNA methylation of miR-181a-5p mediated by DNMT3b drives renal interstitial fibrosis developed from acute kidney injury

Epigenomics. 2024;16(13):945-960. doi: 10.1080/17501911.2024.2370229. Epub 2024 Jul 18.

Abstract

Aim: To explore the role of miR-181a-5p in the progression of acute kidney injury (AKI) to renal interstitial fibrosis (RIF) from the perspective of DNA methylation.Materials & methods: The role of miR-181a-5p was confirmed by collecting clinical samples, injecting miR-181a-5p agomir into tail vein, and transfecting miR-181a-5p mimic in vitro. The mechanism of miR-181a-5p's influence on AKI induced RIF was investigated by methylation-specific PCR, bioinformatic analysis, transcriptome sequencing and so on.Results: MiR-181a-5p plays an important role in AKI induced RIF. DNMT3b-mediated miR-181a-5p promoter hypermethylation is the main reason for the downregulation of miR-181a-5p. HDAC9 and SNAI2 are direct targets of miR-181a-5p.Conclusion: Hypermethylation of miR-181a-5p promoter mediated by DNMT3b promotes AKI induced RIF by targeting HDAC9 and SNAI2.

Keywords: DNMT3b; HDAC9; SNAI2; acute kidney injury; miR-181a-5p; renal interstitial fibrosis.

Plain language summary

[Box: see text].

MeSH terms

  • Acute Kidney Injury* / etiology
  • Acute Kidney Injury* / genetics
  • Acute Kidney Injury* / pathology
  • Animals
  • DNA (Cytosine-5-)-Methyltransferases* / genetics
  • DNA (Cytosine-5-)-Methyltransferases* / metabolism
  • DNA Methylation*
  • DNA Methyltransferase 3B*
  • Fibrosis*
  • Histone Deacetylases / genetics
  • Histone Deacetylases / metabolism
  • Humans
  • Kidney / metabolism
  • Kidney / pathology
  • Male
  • Mice
  • MicroRNAs* / genetics
  • Promoter Regions, Genetic
  • Repressor Proteins / genetics
  • Repressor Proteins / metabolism
  • Snail Family Transcription Factors / genetics
  • Snail Family Transcription Factors / metabolism

Substances

  • DNA (Cytosine-5-)-Methyltransferases
  • DNA Methyltransferase 3B
  • HDAC9 protein, human
  • Histone Deacetylases
  • MicroRNAs
  • MIrn181 microRNA, human
  • Repressor Proteins
  • Snail Family Transcription Factors
  • DNMT3B protein, human
  • Dnmt3b protein, mouse
  • mirn181 microRNA, mouse