Epigenetic regulation of CD38/CD48 by KDM6A mediates NK cell response in multiple myeloma

Nat Commun. 2024 Feb 14;15(1):1367. doi: 10.1038/s41467-024-45561-z.

Abstract

Anti-CD38 monoclonal antibodies like Daratumumab (Dara) are effective in multiple myeloma (MM); however, drug resistance ultimately occurs and the mechanisms behind this are poorly understood. Here, we identify, via two in vitro genome-wide CRISPR screens probing Daratumumab resistance, KDM6A as an important regulator of sensitivity to Daratumumab-mediated antibody-dependent cellular cytotoxicity (ADCC). Loss of KDM6A leads to increased levels of H3K27me3 on the promoter of CD38, resulting in a marked downregulation in CD38 expression, which may cause resistance to Daratumumab-mediated ADCC. Re-introducing CD38 does not reverse Daratumumab-mediated ADCC fully, which suggests that additional KDM6A targets, including CD48 which is also downregulated upon KDM6A loss, contribute to Daratumumab-mediated ADCC. Inhibition of H3K27me3 with an EZH2 inhibitor resulted in CD38 and CD48 upregulation and restored sensitivity to Daratumumab. These findings suggest KDM6A loss as a mechanism of Daratumumab resistance and lay down the proof of principle for the therapeutic application of EZH2 inhibitors, one of which is already FDA-approved, in improving MM responsiveness to Daratumumab.

MeSH terms

  • ADP-ribosyl Cyclase 1
  • Epigenesis, Genetic
  • Histones / metabolism
  • Humans
  • Killer Cells, Natural
  • Multiple Myeloma* / drug therapy
  • Multiple Myeloma* / genetics

Substances

  • Histones
  • ADP-ribosyl Cyclase 1