A pan-cancer analysis implicates human NKIRAS1 as a tumor-suppressor gene

Proc Natl Acad Sci U S A. 2023 Nov 14;120(46):e2312595120. doi: 10.1073/pnas.2312595120. Epub 2023 Nov 6.

Abstract

The NF-κB family of transcription factors and the Ras family of small GTPases are important mediators of proproliferative signaling that drives tumorigenesis and carcinogenesis. The κB-Ras proteins were previously shown to inhibit both NF-κB and Ras activation through independent mechanisms, implicating them as tumor suppressors with potentially broad relevance to human cancers. In this study, we have used two mouse models to establish the relevance of the κB-Ras proteins for tumorigenesis. Additionally, we have utilized a pan-cancer bioinformatics analysis to explore the role of the κB-Ras proteins in human cancers. Surprisingly, we find that the genes encoding κB-Ras 1 (NKIRAS1) and κB-Ras 2 (NKIRAS2) are rarely down-regulated in tumor samples with oncogenic Ras mutations. Reduced expression of human NKIRAS1 alone is associated with worse prognosis in at least four cancer types and linked to a network of genes implicated in tumorigenesis. Our findings provide direct evidence that loss of NKIRAS1 in human tumors that do not carry oncogenic RAS mutations is associated with worse clinical outcomes.

Keywords: NF-kappaB; NKIRAS; Ras proteins; cancer; inflammation.

MeSH terms

  • Animals
  • Carcinogenesis* / genetics
  • Carrier Proteins* / genetics
  • Cell Transformation, Neoplastic / genetics
  • Genes, Tumor Suppressor*
  • Genes, ras
  • Humans
  • Mice
  • NF-kappa B / metabolism
  • ras Proteins / metabolism

Substances

  • NF-kappa B
  • ras Proteins
  • NKIRAS1 protein, human
  • Carrier Proteins