WTAP-mediated m6A modification of lncRNA NORAD promotes intervertebral disc degeneration

Nat Commun. 2022 Mar 18;13(1):1469. doi: 10.1038/s41467-022-28990-6.

Abstract

N6-methyladenosine (m6A) is the most prevalent RNA modification at the posttranscriptional level and involved in various diseases and cellular processes. However, the underlying mechanism of m6A regulation in intervertebral disc degeneration (IVDD) remains elusive. Here, we show that methylation of the lncRNA NORAD significantly increases in senescent nucleus pulposus cells (NPCs) by m6A sequencing. Subsequent loss- and gain-of-function experiments reveal WTAP is increased in senescent NPCs due to an epigenetic increase in H3K4me3 of the promoter mediated by KDM5a, and significantly promotes NORAD m6A modification. Furthermore, YTHDF2-mediated decay of NORAD is enhanced in senescent NPCs, and then deficiency of NORAD results in less sequestraion of PUMILIO proteins, contributing to the augmented activity of PUM1/2, thus repressing the expression of target E2F3 mRNAs and promoting the cellular senescence. Here, we show interruption of NORAD m6A modification or the NORAD/PUMILIO/E2F3 axis could serve as a potential therapeutic target to inhibit the senescence of NPCs and development of IVDD.

MeSH terms

  • Cell Cycle Proteins / metabolism
  • Cellular Senescence / genetics
  • Humans
  • Intervertebral Disc Degeneration* / metabolism
  • Intervertebral Disc* / metabolism
  • Nucleus Pulposus* / metabolism
  • RNA Splicing Factors / metabolism
  • RNA, Long Noncoding* / genetics
  • RNA, Long Noncoding* / metabolism
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Retinoblastoma-Binding Protein 2 / metabolism

Substances

  • Cell Cycle Proteins
  • NORAD long non-coding RNA, human
  • PUM1 protein, human
  • RNA Splicing Factors
  • RNA, Long Noncoding
  • RNA, Messenger
  • RNA-Binding Proteins
  • WTAP protein, human
  • KDM5A protein, human
  • Retinoblastoma-Binding Protein 2