Validation of genetic classifiers derived from mouse and human tumors to identify molecular subtypes of colorectal cancer

Hum Pathol. 2022 Jan:119:1-14. doi: 10.1016/j.humpath.2021.10.002. Epub 2021 Oct 14.

Abstract

Colorectal cancer (CRC) is a leading cause of cancer death in the United States. Standard treatment for advanced-stage CRC for decades has included 5-fluorouracil-based chemotherapy. More recently, targeted therapies for metastatic CRC are being used based on the individual cancer's molecular profile. In the past few years, several different molecular subtype schemes for human CRC have been developed. The molecular subtypes can be distinguished by gene expression signatures and have the potential to be used to guide treatment decisions. However, many subtyping classification methods were developed using mRNA expression levels of hundreds to thousands of genes, making them impractical for clinical use. In this study, we assessed whether an immunohistochemical approach could be used for molecular subtyping of CRCs. We validated two previously published, independent sets of immunohistochemistry classifiers and modified the published methods to improve the accuracy of the scoring methods. In addition, we evaluated whether protein and genetic signatures identified originally in the mouse were linked to clinical outcomes of patients with CRC. We found that low DDAH1 or low GAL3ST2 protein levels in human CRCs correlate with poor patient outcomes. The results of this study have the potential to impact methods for determining the prognosis and therapy selection for patients with CRC.

Keywords: Colorectal cancer; Consensus molecular subtypes; Immunohistochemistry; Novel biomarkers; Patient outcome.

Publication types

  • Comparative Study
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Adenocarcinoma / chemistry*
  • Adenocarcinoma / classification
  • Adenocarcinoma / genetics
  • Adenocarcinoma / pathology
  • Aged
  • Amidohydrolases / analysis*
  • Amidohydrolases / genetics
  • Animals
  • Biomarkers, Tumor / analysis*
  • Biomarkers, Tumor / genetics
  • Colorectal Neoplasms / chemistry*
  • Colorectal Neoplasms / classification
  • Colorectal Neoplasms / genetics
  • Colorectal Neoplasms / pathology
  • Female
  • Genes, APC
  • Humans
  • Immunohistochemistry*
  • Male
  • Mice, Transgenic
  • Middle Aged
  • Predictive Value of Tests
  • Prognosis
  • Reproducibility of Results
  • Sulfotransferases / analysis*
  • Sulfotransferases / genetics
  • Tissue Array Analysis

Substances

  • Biomarkers, Tumor
  • GAL3ST2 protein, human
  • Sulfotransferases
  • Amidohydrolases
  • dimethylargininase