Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation

Nat Commun. 2021 Jul 30;12(1):4644. doi: 10.1038/s41467-021-24911-1.

Abstract

Frameshifting of mRNA during translation provides a strategy to expand the coding repertoire of cells and viruses. How and where in the elongation cycle +1-frameshifting occurs remains poorly understood. We describe seven ~3.5-Å-resolution cryo-EM structures of 70S ribosome complexes, allowing visualization of elongation and translocation by the GTPase elongation factor G (EF-G). Four structures with a + 1-frameshifting-prone mRNA reveal that frameshifting takes place during translocation of tRNA and mRNA. Prior to EF-G binding, the pre-translocation complex features an in-frame tRNA-mRNA pairing in the A site. In the partially translocated structure with EF-G•GDPCP, the tRNA shifts to the +1-frame near the P site, rendering the freed mRNA base to bulge between the P and E sites and to stack on the 16S rRNA nucleotide G926. The ribosome remains frameshifted in the nearly post-translocation state. Our findings demonstrate that the ribosome and EF-G cooperate to induce +1 frameshifting during tRNA-mRNA translocation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biocatalysis
  • Cryoelectron Microscopy
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Frameshifting, Ribosomal / genetics*
  • Models, Molecular
  • Nucleic Acid Conformation
  • Peptide Chain Elongation, Translational / genetics*
  • Peptide Elongation Factor G / chemistry
  • Peptide Elongation Factor G / genetics*
  • Peptide Elongation Factor G / metabolism
  • Protein Conformation
  • RNA, Messenger / chemistry
  • RNA, Messenger / genetics*
  • RNA, Messenger / metabolism
  • RNA, Ribosomal, 16S / chemistry
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 16S / metabolism
  • RNA, Transfer / chemistry
  • RNA, Transfer / genetics*
  • RNA, Transfer / metabolism
  • Ribosomes / genetics*
  • Ribosomes / metabolism
  • Ribosomes / ultrastructure
  • tRNA Methyltransferases / genetics
  • tRNA Methyltransferases / metabolism

Substances

  • Escherichia coli Proteins
  • Peptide Elongation Factor G
  • RNA, Messenger
  • RNA, Ribosomal, 16S
  • RNA, Transfer
  • TrmD protein, E coli
  • tRNA Methyltransferases