Genome-wide analysis of constitutional DNA methylation in familial melanoma

Clin Epigenetics. 2020 Mar 6;12(1):43. doi: 10.1186/s13148-020-00831-7.

Abstract

Background: Heritable epigenetic alterations have been proposed as an explanation for familial clustering of melanoma. Here we performed genome-wide DNA methylation analysis on affected family members not carrying pathogenic variants in established melanoma susceptibility genes, compared with healthy volunteers.

Results: All melanoma susceptibility genes showed the absence of epimutations in familial melanoma patients, and no loss of imprinting was detected. Unbiased genome-wide DNA methylation analysis revealed significantly different levels of methylation in single CpG sites. The methylation level differences were small and did not affect reported tumour predisposition genes.

Conclusion: Our results provide no support for heritable epimutations as a cause of familial melanoma.

Keywords: DNA methylation; Epimutation; Familial melanoma; Loss of imprinting.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • CpG Islands
  • DNA Methylation*
  • Genome, Human
  • Humans
  • Melanoma / genetics*
  • Middle Aged
  • Promoter Regions, Genetic
  • Skin Neoplasms / genetics*