Novel DNA methylation biomarkers for hexavalent chromium exposure: an epigenome-wide analysis

Epigenomics. 2020 Feb;12(3):221-233. doi: 10.2217/epi-2019-0216. Epub 2020 Jan 21.

Abstract

Aim: We aimed to identify differential methylation of genes that could illuminate the biological mechanisms of chromium (VI) toxicity in this exposure-control study. Materials & methods: DNA methylation was measured in blood samples collected from electroplating workers and controls using a combination of Infinium Methylation450K Chip and targeted-bisulfite sequencing. QuantiGene assay was used to detect the mRNA expression of differentially methylated genes. Inductively coupled plasma-mass spectrometry was used to quantify metals in blood and urine samples. The cytosine-phosphate-guanine sites methylation and gene expression were confirmed in a human lymphoblastoid cell line. Results & conclusion: A total of 131 differentially methylated cytosine-phosphate-guanine sites were found between exposures and controls. DNA methylation of SEMA4B may serve as a potential biomarker for chromium (VI) exposure.

Keywords: Cr(VI)-exposed populations; DNA methylation; Illumina 450K; gene expression; targeted-bisulfite sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers*
  • Carcinogens, Environmental / adverse effects*
  • Chromium / adverse effects*
  • DNA Methylation*
  • Epigenesis, Genetic / drug effects*
  • Epigenomics* / methods
  • Gene Expression Profiling
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Occupational Exposure / adverse effects*
  • Transcriptome

Substances

  • Biomarkers
  • Carcinogens, Environmental
  • Chromium
  • chromium hexavalent ion