Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P. vivax research

Elife. 2019 Jun 17:8:e45829. doi: 10.7554/eLife.45829.

Abstract

Tackling relapsing Plasmodium vivax and zoonotic Plasmodium knowlesi infections is critical to reducing malaria incidence and mortality worldwide. Understanding the biology of these important and related parasites was previously constrained by the lack of robust molecular and genetic approaches. Here, we establish CRISPR-Cas9 genome editing in a culture-adapted P. knowlesi strain and define parameters for optimal homology-driven repair. We establish a scalable protocol for the production of repair templates by PCR and demonstrate the flexibility of the system by tagging proteins with distinct cellular localisations. Using iterative rounds of genome-editing we generate a transgenic line expressing P. vivax Duffy binding protein (PvDBP), a lead vaccine candidate. We demonstrate that PvDBP plays no role in reticulocyte restriction but can alter the macaque/human host cell tropism of P. knowlesi. Critically, antibodies raised against the P. vivax antigen potently inhibit proliferation of this strain, providing an invaluable tool to support vaccine development.

Keywords: CRISPR-Cas9; Duffy binding protein; P. falciparum; Plasmodium knowlesi; Plasmodium vivax; genetics; genome-editing; genomics; infectious disease; microbiology; vaccine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antigens, Protozoan / genetics
  • Antigens, Protozoan / immunology
  • Antigens, Protozoan / metabolism
  • Biomedical Research / methods
  • Biomedical Research / trends
  • Gene Editing / methods*
  • Humans
  • Malaria / immunology
  • Malaria / parasitology
  • Malaria / prevention & control
  • Malaria Vaccines / administration & dosage
  • Malaria Vaccines / immunology
  • Malaria, Vivax / genetics*
  • Malaria, Vivax / immunology
  • Parasites / genetics*
  • Parasites / immunology
  • Parasites / physiology
  • Plasmodium knowlesi / genetics*
  • Plasmodium knowlesi / immunology
  • Plasmodium knowlesi / physiology
  • Protozoan Proteins / genetics
  • Protozoan Proteins / immunology
  • Protozoan Proteins / metabolism
  • Receptors, Cell Surface / genetics
  • Receptors, Cell Surface / immunology
  • Receptors, Cell Surface / metabolism

Substances

  • Antigens, Protozoan
  • Duffy antigen binding protein, Plasmodium
  • Malaria Vaccines
  • Protozoan Proteins
  • Receptors, Cell Surface