Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution

PLoS Genet. 2018 Nov 13;14(11):e1007796. doi: 10.1371/journal.pgen.1007796. eCollection 2018 Nov.

Abstract

When environments change, populations may adapt surprisingly fast, repeatedly and even at microgeographic scales. There is increasing evidence that such cases of rapid parallel evolution are fueled by standing genetic variation, but the source of this genetic variation remains poorly understood. In the saltmarsh beetle Pogonus chalceus, short-winged 'tidal' and long-winged 'seasonal' ecotypes have diverged in response to contrasting hydrological regimes and can be repeatedly found along the Atlantic European coast. By analyzing genomic variation across the beetles' distribution, we reveal that alleles selected in the tidal ecotype are spread across the genome and evolved during a singular and, likely, geographically isolated divergence event, within the last 190 Kya. Due to subsequent admixture, the ancient and differentially selected alleles are currently polymorphic in most populations across its range, which could potentially allow for the fast evolution of one ecotype from a small number of random individuals, as low as 5 to 15, from a population of the other ecotype. Our results suggest that cases of fast parallel ecological divergence can be the result of evolution at two different time frames: divergence in the past, followed by repeated selection on the same divergently evolved alleles after admixture. These findings highlight the importance of an ancient and, likely, allopatric divergence event for driving the rate and direction of contemporary fast evolution under gene flow. This mechanism is potentially driven by periods of geographic isolation imposed by large-scale environmental changes such as glacial cycles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Animals
  • Atlantic Ocean
  • Coleoptera / anatomy & histology
  • Coleoptera / classification
  • Coleoptera / genetics*
  • Ecosystem
  • Ecotype
  • Europe
  • Evolution, Molecular
  • Gene Flow
  • Genetic Speciation
  • Genetic Variation
  • Genetics, Population
  • Genome, Insect
  • Models, Genetic
  • Phylogeny
  • Polymorphism, Genetic
  • Time Factors

Associated data

  • Dryad/10.5061/dryad.77r93d5

Grants and funding

This work was supported by funding received from the FWO-Flanders (PhD grant to SVB) and the Belgian Science Policy (belspo MO/36/ 025, BR/121/PI/GENESORT and BR/175/PI/PARAWINGS to FH) and was partly conducted within the framework of the Interuniversity Attraction Poles program IAP (SPEEDY) – Belgian Science Policy. The genomic analyses were carried out using the STEVIN Supercomputer Infrastructure at Ghent University, funded by Ghent University, the Flemish Supercomputer Center (VSC), the Hercules Foundation and the Flemish Government – Department EWI. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.