PomBase: The Scientific Resource for Fission Yeast

Methods Mol Biol. 2018:1757:49-68. doi: 10.1007/978-1-4939-7737-6_4.

Abstract

The fission yeast Schizosaccharomyces pombe has become well established as a model species for studying conserved cell-level biological processes, especially the mechanics and regulation of cell division. PomBase integrates the S. pombe genome sequence with traditional genetic, molecular, and cell biological experimental data as well as the growing body of large datasets generated by emerging high-throughput methods. This chapter provides insight into the curation philosophy and data organization at PomBase, and provides a guide to using PomBase for infrequent visitors and anyone considering exploring S. pombe in their research.

Keywords: Annotation extensions; Biological database; Fission yeast; GO slim; Gene ontology; Model organism; Schizosaccharomyces pombe.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Computational Biology
  • Databases, Genetic*
  • Gene Ontology
  • Genome, Fungal
  • Genomics / methods
  • Molecular Sequence Annotation
  • Schizosaccharomyces / genetics*
  • Software
  • Web Browser