Competitive Argonaute-Based RNA Immunoprecipitation for Investigation of Transcriptomic Response to Anti-miR

Methods Mol Biol. 2017:1517:91-102. doi: 10.1007/978-1-4939-6563-2_6.

Abstract

Identification and validation of microRNA (miRNA) target genes is essential for gaining a better understanding of the many different functions miRNAs have in healthy and diseased cells. From a practical standpoint, validated target genes are also useful for monitoring pharmacological activity of developmental therapeutics that modulate miRNAs, such as anti-miRNA oligonucleotides (anti-miR). Here, we describe a method that uses changes in Argonaute 2-RNA immunoprecipitation in response to competition by anti-miR, titrated ex vivo, as physical evidence for target validation.

Keywords: Anti-miR oligonucleotides; Argonaute proteins; Immunoprecipitation; microRNA target validation; microRNAs; microRNAs/antagonists and inhibitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antagomirs / genetics
  • Antagomirs / therapeutic use
  • Argonaute Proteins / genetics*
  • Humans
  • Immunoprecipitation / methods*
  • MicroRNAs / genetics*
  • MicroRNAs / therapeutic use
  • Oligonucleotide Array Sequence Analysis / methods*
  • RNA, Messenger / genetics
  • Transcriptome / genetics

Substances

  • Antagomirs
  • Argonaute Proteins
  • MicroRNAs
  • RNA, Messenger