Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq

Development. 2015 Oct 15;142(20):3468-77. doi: 10.1242/dev.123950. Epub 2015 Sep 22.

Abstract

During mammalian pre-implantation embryo development, when the first asymmetry emerges and how it develops to direct distinct cell fates remain longstanding questions. Here, by analyzing single-blastomere transcriptome data from mouse and human pre-implantation embryos, we revealed that the initial blastomere-to-blastomere biases emerge as early as the first embryonic cleavage division, following a binomial distribution pattern. The subsequent zygotic transcriptional activation further elevated overall blastomere-to-blastomere biases during the two- to 16-cell embryo stages. The trends of transcriptional asymmetry fell into two distinct patterns: for some genes, the extent of asymmetry was minimized between blastomeres (monostable pattern), whereas other genes, including those known to be lineage specifiers, showed ever-increasing asymmetry between blastomeres (bistable pattern), supposedly controlled by negative or positive feedbacks. Moreover, our analysis supports a scenario in which opposing lineage specifiers within an early blastomere constantly compete with each other based on their relative ratio, forming an inclined 'lineage strength' that pushes the blastomere onto a predisposed, yet flexible, lineage track before morphological distinction.

Keywords: Bistable model; Lineage divergence; Monostable model; Pre-implantation embryo development; Transcriptional symmetry-breaking.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Blastocyst
  • Blastomeres / physiology*
  • Body Patterning
  • CDX2 Transcription Factor
  • Cell Lineage
  • Cluster Analysis
  • Embryo Implantation
  • Embryo, Mammalian
  • Embryonic Development*
  • Female
  • Homeodomain Proteins / physiology
  • Humans
  • Mice
  • Mice, Inbred C57BL
  • Protein-Arginine N-Methyltransferases / physiology
  • RNA / analysis
  • Sequence Analysis, RNA / methods*
  • Single-Cell Analysis
  • Time Factors
  • Transcription Factors / physiology
  • Transcription, Genetic*
  • Transcriptional Activation
  • Zygote / physiology

Substances

  • CDX2 Transcription Factor
  • CDX2 protein, human
  • Cdx2 protein, mouse
  • Homeodomain Proteins
  • Transcription Factors
  • RNA
  • Protein-Arginine N-Methyltransferases
  • coactivator-associated arginine methyltransferase 1