The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae)

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2935-6. doi: 10.3109/19401736.2015.1060448. Epub 2015 Jul 8.

Abstract

The complete chloroplast genome of the medicinal plant Rheum palmatum L. (Polygonaceae) has been reconstructed from the whole-genome Illumina sequencing data. The genome is 161 541 bp in length, and exhibits a typical quadripartite structure of the large (LSC, 86 518 bp) and small (SSC, 13 111 bp) single-copy regions, separated by a pair of inverted repeats (IRs, 30 956 bp each). The chloroplast genome contains 131 genes, including 84 protein-coding genes (78 PCG species), eight ribosomal RNA genes (four rRNA species) and 37 transfer RNA genes (28 tRNA species). Phylogenetic tree based on the maximum parsimony (MP) analysis of 65 chloroplast protein-coding genes for 13 taxa demonstrated a close relationship between R. palmatum and Fagopyrum esculentum subsp. ancestrale in Polygonaceae.

Keywords: Chloroplast genome; Illumina sequencing; MITObim; Rheum palmatum L..

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • Genes, Chloroplast
  • Genes, Plant
  • Genome Size
  • Genome, Chloroplast*
  • Open Reading Frames
  • Phylogeny
  • Plants, Medicinal / classification
  • Plants, Medicinal / genetics
  • Rheum / classification*
  • Rheum / genetics*
  • Sequence Analysis, DNA
  • Whole Genome Sequencing