The selenocysteine-inserting opal suppressor serine tRNA from E. coli is highly unusual in structure and modification

Nucleic Acids Res. 1989 Sep 25;17(18):7159-65. doi: 10.1093/nar/17.18.7159.

Abstract

Selenocysteine is cotranslationally incorporated into selenoproteins in a unique pathway involving tRNA mediated suppression of a UGA nonsense codon (1-3). The DNA sequence of the gene for this suppressor tRNA from Escherichia coli predicts unusual features of the gene product (4). We determined the sequence of this serine tRNA (tRNA(UCASer]. It is the longest tRNA (95 nt) known to date with an acceptor stem of 8 base pairs and lacks some of the 'invariant' nucleotides found in other tRNAs. It is the first E. coli tRNA that contains the hypermodified nucleotide i6A, adjacent to the UGA-recognizing anticodon UCA. The implications of the unusual structure and modification of this tRNA on recognition by seryl-tRNA synthetase, by tRNA modifying enzymes, and on codon recognition are discussed.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acyl-tRNA Synthetases / metabolism
  • Base Sequence
  • Chromatography, High Pressure Liquid
  • Codon
  • Cysteine
  • Escherichia coli / genetics*
  • Genes, Bacterial
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Ser / genetics
  • RNA, Transfer, Ser / ultrastructure*
  • Selenium
  • Selenocysteine
  • Structure-Activity Relationship
  • Suppression, Genetic*

Substances

  • Codon
  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Ser
  • Selenocysteine
  • Amino Acyl-tRNA Synthetases
  • Selenium
  • Cysteine

Associated data

  • GENBANK/X15993